PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462904384 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 236aa MW: 26508.8 Da PI: 4.7985 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 48 | 3.9e-15 | 21 | 67 | 1 | 48 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 lppGfrF+Ptdeel+++yL++k+++ + +++evd+yk+ePwdL 462904384 21 LPPGFRFRPTDEELLTHYLARKAADAGFAP-AAVREVDLYKAEPWDLM 67 79*************************888.78*************94 PP | |||||||
2 | NAM | 34.9 | 4.6e-11 | 70 | 94 | 104 | 128 |
NAM 104 ktLvfykgrapkgektdWvmheyrl 128 ktLvfy+grap+g kt+Wvmheyrl 462904384 70 KTLVFYRGRAPRGDKTNWVMHEYRL 94 89*********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 16.68 | 1 | 122 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.23E-31 | 19 | 122 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-12 | 22 | 94 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MMQKCVGMGN DDRSDRCCTP LPPGFRFRPT DEELLTHYLA RKAADAGFAP AAVREVDLYK 60 AEPWDLMPAK TLVFYRGRAP RGDKTNWVMH EYRLVEGHAA WTQTFARGRA QIEWVVCRMF 120 MKKPPGGEAS RQETALHPHD DHLQMSTDEL EGSKAPAPAA AGSEQANFSC DYETYQGLLQ 180 QSDEDFLVKC RELDGLSSSA LPQATLLGED LAADSSFDLQ LPKLLDYESF PFIHDF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462904384 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462370.1 | 7e-34 | NAC domain-containing protein 92 | ||||
TrEMBL | A0A0E0QRB9 | 9e-48 | A0A0E0QRB9_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI09G10740.1 | 1e-48 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15352 | 16 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 2e-30 | NAC domain containing protein 58 |