PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462904302 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB | ||||||||
Protein Properties | Length: 354aa MW: 37848.3 Da PI: 9.4336 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.1 | 1.5e-11 | 60 | 96 | 11 | 48 |
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +l++ v+++G + W+ +ar ++ gR +kqc++rw ++l 462904302 60 ILKNMVREHGERKWAVVARALP-GRIGKQCRERWTNHL 96 6999******************.************996 PP | |||||||
2 | Myb_DNA-binding | 52.7 | 9.8e-17 | 103 | 144 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+e+d++l++a+k +G++ W+ Ia+ + gR+++ +k++w+ 462904302 103 SHWTEEDDKRLIHAHKIYGNR-WSVIAKFLE-GRSENAVKNHWN 144 67*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 8.924 | 50 | 96 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-5 | 55 | 98 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-20 | 59 | 103 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.0E-9 | 60 | 96 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.07E-10 | 60 | 96 | No hit | No description |
SuperFamily | SSF46689 | 2.34E-27 | 76 | 149 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.212 | 97 | 151 | IPR017930 | Myb domain |
SMART | SM00717 | 5.7E-15 | 101 | 149 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-15 | 103 | 144 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-20 | 104 | 146 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.16E-14 | 105 | 144 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MESESSVPLY QGVSAGAVHA GSVSHQVIPG AGMISGMGAL LAGFGMAPAG MFLPGRPPAI 60 LKNMVREHGE RKWAVVARAL PGRIGKQCRE RWTNHLRPDI KKSHWTEEDD KRLIHAHKIY 120 GNRWSVIAKF LEGRSENAVK NHWNATRRSL RAKRRLKKKK NAPASPPGQQ LSELEDYIRG 180 LYPGDAAGAG ADTPAPPASP PSPSSYNQQI GYGEAVGSPA SGGAAAAASP AGFDPAAGMG 240 MMYLNEGAGG SSSASSSTVP LMLDLNASYY YGGESMAPSP MHPMDIDHHH QQQQQQYQHQ 300 EQAPSYTNLL MGYPFIDNFV SWQSSNVHHA STSAANAGHQ YYSIGGASWH PGSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-35 | 64 | 146 | 21 | 103 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462904302 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001132209.1 | 9e-75 | uncharacterized protein LOC100193638 | ||||
TrEMBL | B4FFS1 | 2e-73 | B4FFS1_MAIZE; MYB-type transcription factor | ||||
STRING | GRMZM2G121570_P01 | 2e-70 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11050.1 | 2e-37 | myb domain protein 64 |