PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462904052
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 145aa    MW: 16092.3 Da    PI: 12.3897
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462904052genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.9e-172168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEdell + v++ G g+W+t +r+ g+ R++k+c++rw +yl
        462904052 21 RGPWSPEEDELLRRFVEREGEGRWRTLPRRAGLVRCGKSCRLRWMNYL 68
                     89******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.1851672IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-211770IPR009057Homeodomain-like
SMARTSM007172.4E-132070IPR001005SANT/Myb domain
PfamPF002494.4E-152168IPR001005SANT/Myb domain
SuperFamilySSF466891.67E-222296IPR009057Homeodomain-like
CDDcd001677.67E-112368No hitNo description
Gene3DG3DSA:1.10.10.601.3E-67197IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MTRKQQTAAA RAGGAGPALK RGPWSPEEDE LLRRFVEREG EGRWRTLPRR AGLVRCGKSC  60
RLRWMNYLRP DIKRGPIAGD EEDLILRLHR LLGNRFIHAR ARSTGGRSSP GGCRGARTTR  120
SRTTGTRTSA GSSSRRASTR APTGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-14171263110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462904052
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703062e-79HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181361.16e-45transcription repressor MYB5-like
SwissprotQ388501e-39MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A446NL667e-46A0A446NL66_TRITD; Uncharacterized protein
TrEMBLA0A453FA657e-46A0A453FA65_AEGTS; Uncharacterized protein
STRINGMLOC_16037.33e-44(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-40myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]