PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462903983 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 178aa MW: 20170 Da PI: 10.1012 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107.8 | 1.3e-33 | 14 | 154 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...lelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyW 83 lp+G++F+Ptd+el+ e+L+ k++ + + +i+ +i++++P++Lp v ++ +fF++ +k+y+tg+rk+r+++ + +W 462903983 14 LPAGVKFDPTDQELL-EHLEGKARPDAhklH---PlvdefipTIEGEnGICYTHPERLP-GVGKDGLIRHFFHRPSKAYTTGTRKRRKVHtdeqggETRW 108 799************.99****998884451...233444333665557**********.555555677******************744456555778* PP NAM 84 katgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++tgk+++v++ +g+l+g kk+Lv+y g+++k+ekt+Wvmh+y+l 462903983 109 HKTGKTRPVFA-NGKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 154 ***********.999***********6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-37 | 5 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.768 | 14 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.7E-16 | 15 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MLTAAATIQD LPGLPAGVKF DPTDQELLEH LEGKARPDAH KLHPLVDEFI PTIEGENGIC 60 YTHPERLPGV GKDGLIRHFF HRPSKAYTTG TRKRRKVHTD EQGGETRWHK TGKTRPVFAN 120 GKLKGYKKIL VLYTNYGKQR KPEKTNWVMH QYHLGSDEEE KDGELVVSKV AAAGRRRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462903983 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102794 | 0.0 | AK102794.1 Oryza sativa Japonica Group cDNA clone:J033108B03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814631.1 | 1e-120 | NAC domain-containing protein 73-like isoform X1 | ||||
Swissprot | O49459 | 1e-101 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A2T7DIP1 | 1e-119 | A0A2T7DIP1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J05241.1.p | 1e-120 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3075 | 37 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-104 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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