PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462903980

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HB-other

Protein Properties

Length: 1718aa MW: 191787 Da PI: 5.124

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462903980	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51.2	2.2e-16	4	53	8	57
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t++qle+Le+ ++ ++yps++ r eL+ k+gL++rq ++WF+ rR k++k 462903980 4 TPYQLEVLESTYRAEQYPSEALRMELSVKIGLSDRQLQMWFCHRRLKDRK 53 89**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.949	1	54	IPR001356	Homeobox domain
SMART	SM00389	2.2E-9	2	58	IPR001356	Homeobox domain
CDD	cd00086	3.26E-12	3	54	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.4E-15	3	53	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.03E-13	3	53	IPR009057	Homeodomain-like
Pfam	PF00046	3.7E-14	4	53	IPR001356	Homeobox domain
SMART	SM00571	9.0E-17	640	699	IPR018501	DDT domain
PROSITE profile	PS50827	15.591	640	699	IPR018501	DDT domain
Pfam	PF02791	2.4E-16	643	696	IPR018501	DDT domain
Pfam	PF15612	1.2E-7	1016	1058	IPR028942	WHIM1 domain
Pfam	PF15613	8.0E-13	1194	1265	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1718 aa Download sequence Send to blast
MMKTPYQLEV LESTYRAEQY PSEALRMELS VKIGLSDRQL QMWFCHRRLK DRKPPSKRQR 60 RDEEAALAPV MAPPSLLPLP AVPLASSDLM MGTPVPFEEP LHPIHLRRGA GRSSAMARIS 120 MPDIGRRYYE PPPVLFPPPT ASVHLTQSEL RQIRSVESQL GEPLREDGPV LGNAFDPLPP 180 GAFGAPIVPE QQKQPVRSYD AKIFSRHDPK LLKASAFLPT MEPPFVPTSF GGKRKSTVGN 240 PTIVQSHAGS RAVHEYQFLP EQPGDTYERA SRSHYYDTPV EASAFLPTME PPFVPTSFVG 300 KRKSTVGNPT SVQPHVGSRA VHEYQFLPEQ PSDTYERASQ SHYYDTPVEV SNSRISPLTS 360 GSQLLHGSDE AAPSFAYQGQ MSGSGILPQS DRSQTFSAVP GSYEMAQSSG NLNSVPVEGH 420 FGISEVAGFE NSLISSERGV YDEEETSRVD RKRKHNEEAK IAKEVEAHER RIRKELEKQD 480 MLNRKRDEQR RKEMEKLDRE RRKEEERLLR ERQREEERFQ REQRREHERM EKFLLQQSRR 540 AEKQRQKEEI RKQKEAARQK AANERATARR IAREYLELVE DERLELMELA AQSKGLPSML 600 HLDSNTLQQL DSFRGMLSQF PPQTVRLKVP FSIKPWSQSE DYVAKLLMVW KFLITFTDIL 660 GLSPVTLDEF VQSLHDYDSR LLGELHIALL KSIIKDIEDV ARTPSVALGV NPEGGHPQIV 720 EGAYAWGFNI RSWQRHLNLL TWPEILRQFA LSAGFGPQLK KRKVEEAYYR NDNEGHDGED 780 VISTLRSGSA AVNAAALMKE RGYTHRRRSR HRLTPGTVKF AAFHEVMVSQ YWKLQKKSRN 840 LDIAAALSRD TKLFERTAPS TYCVKSPYRK DPTDSEAVLS AAREKIRAFQ NVLSDSEAEK 900 EADDAERDED SEADDADEDI DGDDVTTVVG GDKDPLLAVK AQDGVPSTAT AGGIKAEANS 960 VGDVLNSQSS FTKSATAAPL STACTSGDSP LGASSKNHEA IPGDSEDTQI DESNQVEPWL 1020 QALAEGDYCE LSVEERLNAL FALVGVATEG NSIRAVLEER LELANALKKQ MWAEAQLDKR 1080 RFKEEFANRM QCNSYMSLKA DINHENNAAD GTKTPGFNAD KENDGNVGAI NNYEMLGQHS 1140 QGNDGSVSYE RNGASQEISA TPDASAIQHA YADKTRSQLK LYIGHRAEQL YVYRSLPLGQ 1200 DRRRNRYWQF TTSASSNDPG SGRIFFESID GHWRVIDSEE AFDSLVSSLD TRGSRESQLH 1260 SMLQMIEATF KEAVKRSAAI EQSFGRNIKN GATDMIRANF CSEFGSPSSA SDSTKASIPS 1320 EALQSFWTDV CRKSWGVKLY STKSVGEMFQ LLTLLESAIR RDFLSSDFET TSECLNTNSQ 1380 DTASQNPVGL AGSATVLPWI PDTTAAVMLR MLDLDAAILY IQNQKMERDG GDFMKLPSRY 1440 TVGKNTQEPA PLERTGFDLY DGRWLPSSGR RGRGRGSRGG GRGGRGRSRG GRVPRGISSS 1500 SRIEFKDDTV MHEKVPRKNA RRGRTRGRGR GRGRRTVRPR QPSESRGRSI PKANLLGSFS 1560 MLSSSKPATV EPPRSSGADE WGLETRIPYI EGDENCSGSE SDRSEDNEEN GQPMDVEYEQ 1620 QVPDYSVGYS GVSRPHELMP ATDRETTDEE DEDAEGDGDG DGDDYVEEDD ADNADDDIDA 1680 EMEEDDEIGD EGDGDHGGDG VEMDEDEGGT SYSSDYSE

Sequence ? help Back to Top

Protein Sequence Length: 1718 aa Download sequence Send to blast

MMKTPYQLEV LESTYRAEQY PSEALRMELS VKIGLSDRQL QMWFCHRRLK DRKPPSKRQR  60
RDEEAALAPV MAPPSLLPLP AVPLASSDLM MGTPVPFEEP LHPIHLRRGA GRSSAMARIS  120
MPDIGRRYYE PPPVLFPPPT ASVHLTQSEL RQIRSVESQL GEPLREDGPV LGNAFDPLPP  180
GAFGAPIVPE QQKQPVRSYD AKIFSRHDPK LLKASAFLPT MEPPFVPTSF GGKRKSTVGN  240
PTIVQSHAGS RAVHEYQFLP EQPGDTYERA SRSHYYDTPV EASAFLPTME PPFVPTSFVG  300
KRKSTVGNPT SVQPHVGSRA VHEYQFLPEQ PSDTYERASQ SHYYDTPVEV SNSRISPLTS  360
GSQLLHGSDE AAPSFAYQGQ MSGSGILPQS DRSQTFSAVP GSYEMAQSSG NLNSVPVEGH  420
FGISEVAGFE NSLISSERGV YDEEETSRVD RKRKHNEEAK IAKEVEAHER RIRKELEKQD  480
MLNRKRDEQR RKEMEKLDRE RRKEEERLLR ERQREEERFQ REQRREHERM EKFLLQQSRR  540
AEKQRQKEEI RKQKEAARQK AANERATARR IAREYLELVE DERLELMELA AQSKGLPSML  600
HLDSNTLQQL DSFRGMLSQF PPQTVRLKVP FSIKPWSQSE DYVAKLLMVW KFLITFTDIL  660
GLSPVTLDEF VQSLHDYDSR LLGELHIALL KSIIKDIEDV ARTPSVALGV NPEGGHPQIV  720
EGAYAWGFNI RSWQRHLNLL TWPEILRQFA LSAGFGPQLK KRKVEEAYYR NDNEGHDGED  780
VISTLRSGSA AVNAAALMKE RGYTHRRRSR HRLTPGTVKF AAFHEVMVSQ YWKLQKKSRN  840
LDIAAALSRD TKLFERTAPS TYCVKSPYRK DPTDSEAVLS AAREKIRAFQ NVLSDSEAEK  900
EADDAERDED SEADDADEDI DGDDVTTVVG GDKDPLLAVK AQDGVPSTAT AGGIKAEANS  960
VGDVLNSQSS FTKSATAAPL STACTSGDSP LGASSKNHEA IPGDSEDTQI DESNQVEPWL  1020
QALAEGDYCE LSVEERLNAL FALVGVATEG NSIRAVLEER LELANALKKQ MWAEAQLDKR  1080
RFKEEFANRM QCNSYMSLKA DINHENNAAD GTKTPGFNAD KENDGNVGAI NNYEMLGQHS  1140
QGNDGSVSYE RNGASQEISA TPDASAIQHA YADKTRSQLK LYIGHRAEQL YVYRSLPLGQ  1200
DRRRNRYWQF TTSASSNDPG SGRIFFESID GHWRVIDSEE AFDSLVSSLD TRGSRESQLH  1260
SMLQMIEATF KEAVKRSAAI EQSFGRNIKN GATDMIRANF CSEFGSPSSA SDSTKASIPS  1320
EALQSFWTDV CRKSWGVKLY STKSVGEMFQ LLTLLESAIR RDFLSSDFET TSECLNTNSQ  1380
DTASQNPVGL AGSATVLPWI PDTTAAVMLR MLDLDAAILY IQNQKMERDG GDFMKLPSRY  1440
TVGKNTQEPA PLERTGFDLY DGRWLPSSGR RGRGRGSRGG GRGGRGRSRG GRVPRGISSS  1500
SRIEFKDDTV MHEKVPRKNA RRGRTRGRGR GRGRRTVRPR QPSESRGRSI PKANLLGSFS  1560
MLSSSKPATV EPPRSSGADE WGLETRIPYI EGDENCSGSE SDRSEDNEEN GQPMDVEYEQ  1620
QVPDYSVGYS GVSRPHELMP ATDRETTDEE DEDAEGDGDG DGDDYVEEDD ADNADDDIDA  1680
EMEEDDEIGD EGDGDHGGDG VEMDEDEGGT SYSSDYSE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1523	1533	RTRGRGRGRGR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462903980

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969494.1	0.0	homeobox-DDT domain protein RLT2 isoform X1
Refseq	XP_022682618.1	0.0	homeobox-DDT domain protein RLT2 isoform X2
TrEMBL	A0A368R972	0.0	A0A368R972_SETIT; Uncharacterized protein
STRING	Sb03g030770.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.2	0.0	Homeodomain-like transcriptional regulator