PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462903515
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family Trihelix
Protein Properties Length: 230aa    MW: 25378.6 Da    PI: 10.7604
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462903515genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.59.8e-153513787
   trihelix 37 kmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
               k++e+g++rs+k+Ckek+en++k+yk++ke++ +r+++  +t+++f+qlea
  462903515  3 KLAEQGYNRSAKKCKEKFENVHKYYKRTKESRAGRSDG--KTYRFFTQLEA 51
               789*******************************8544..56*******85 PP
2trihelix83.13.6e-26168230163
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykk 63 
                rW+k ev+aLi++r+++++r++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk
  462903515 168 RWPKAEVHALIQLRSNLDTRYQEAGPKGPLWEEISAGMRRLGYNRSAKRCKEKWENINKYFKK 230
                8*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.9E-10252No hitNo description
SMARTSM007170.0014165227IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-5166224IPR009057Homeodomain-like
PfamPF138372.7E-17167230No hitNo description
PROSITE profilePS500907.329167225IPR017877Myb-like domain
CDDcd122031.95E-28168230No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MRKLAEQGYN RSAKKCKEKF ENVHKYYKRT KESRAGRSDG KTYRFFTQLE ALHGTGSSSP  60
APSPWTSFAP PSTAPLPVRA PAEPPPAVTS AGMPAMGMGN MSFSTTTPTR RTRTTRAPRS  120
WESPTPATPQ QAPPPTQQQQ SSSDIVMTPL ADTPGYDGSG GGGATSSRWP KAEVHALIQL  180
RSNLDTRYQE AGPKGPLWEE ISAGMRRLGY NRSAKRCKEK WENINKYFKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462903515
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0252962e-86AC025296.10 Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence.
GenBankAP0149662e-86AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126182e-86CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
GenBankCT8305452e-86CT830545.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA218F06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794483.11e-50trihelix transcription factor GTL1-like isoform X1
RefseqXP_025794484.11e-50trihelix transcription factor GTL1-like isoform X1
RefseqXP_025794485.13e-51trihelix transcription factor GTL1-like isoform X2
SwissprotQ391172e-34TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLM8A0H48e-57M8A0H4_TRIUA; Trihelix transcription factor GT-2
STRINGTRIUR3_33826-P11e-57(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.13e-35Trihelix family protein