PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462902602
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 303aa    MW: 33737.3 Da    PI: 10.281
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462902602genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.82e-1867155197
                EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                ffkv+ p  +++  rl +p +f+ ++ +++++++  ++l+ +sg++W+v l  +   +r  +t+GWk+Fv ++ L+ g +++F++dg+sef+ v  v+
  462902602  67 FFKVFFPRQSGE--RLEIPQPFC-KYlKEEPNRP--VSLKGPSGNTWQVML--TSVEERLGFTQGWKDFVGDHSLQPGHILMFTYDGHSEFTVV--VL 155
                888997766665..59*******.5547777776..***************..99999999**************************9999554..44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100175.58E-1965156No hitNo description
PROSITE profilePS5086313.97265158IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-2166158IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-2166158IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-1667158IPR003340B3 DNA binding domain
PfamPF023623.4E-1667154IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAREKQQQQQ QGTSSAAAVA KESGMVKRKE KGDAHQQGIS SAAAAAKESS MEKRKEKGDA  60
VGAGRRFFKV FFPRQSGERL EIPQPFCKYL KEEPNRPVSL KGPSGNTWQV MLTSVEERLG  120
FTQGWKDFVG DHSLQPGHIL MFTYDGHSEF TVVVLSNSGV DDTSALDAQP SEERVIQAEV  180
EEGAQDTDAA GASEQEASAL PTVEGNEKTR KRVRQGMVKS PAPKRHLSVQ KKPEKMNVSF  240
VPRVGKVVSK KLRQPVVTSQ RRQITEEEKA HALKRANEFK SKNRFTLQVM MASYVYMGFF  300
MVM
Cis-element ? help Back to Top
SourceLink
PlantRegMap462902602
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827675.11e-73B3 domain-containing protein Os11g0197600-like
RefseqXP_025827676.11e-73B3 domain-containing protein Os11g0197600-like
TrEMBLA0A0A9DCS31e-78A0A0A9DCS3_ARUDO; Uncharacterized protein
STRINGPavir.J06349.1.p2e-73(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-22B3 family protein