PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462902545
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 383aa    MW: 42234.9 Da    PI: 5.3249
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462902545genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.43.9e-141462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l+  vk++G+  +W + +++ g++R++k+c++rw++yl
        462902545 14 RGPWSEEEDAILKGFVKRFGNAgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                     89******************99*************************97 PP
2Myb_DNA-binding41.53.2e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T eEd l++ +  + G++ W+ Ia++++ gRt++++k++w++
        462902545  69 GGFTDEEDNLILSLYGEIGSK-WSVIASRLP-GRTDNDVKNYWNT 111
                      569******************.*********.***********97 PP
3Myb_DNA-binding23.81e-071191521648
                      HHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  16 vkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                      v+++G+  +W + +++ g++R++k+c++rw++yl
        462902545 119 VQRFGNAgNWIALPQKAGLKRCGKSCRLRWLNYL 152
                      89999989************************97 PP
4Myb_DNA-binding41.53.2e-13159201246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T eEd l++ +  + G++ W+ Ia++++ gRt++++k++w++
        462902545 159 GGFTDEEDNLILSLYGEIGSK-WSVIASRLP-GRTDNDVKNYWNT 201
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.063962IPR017930Myb domain
SuperFamilySSF466892.04E-2611109IPR009057Homeodomain-like
SMARTSM007171.2E-91364IPR001005SANT/Myb domain
PfamPF002497.0E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-211569IPR009057Homeodomain-like
CDDcd001679.49E-71662No hitNo description
PROSITE profilePS5129420.57463117IPR017930Myb domain
SMARTSM007172.6E-1267115IPR001005SANT/Myb domain
PfamPF002492.9E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2270116IPR009057Homeodomain-like
CDDcd001674.73E-971113No hitNo description
PROSITE profilePS500906.493117152IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.1E-14117159IPR009057Homeodomain-like
PfamPF002492.8E-6118152IPR001005SANT/Myb domain
SuperFamilySSF466891.36E-21138207IPR009057Homeodomain-like
PROSITE profilePS5129419.497153207IPR017930Myb domain
SMARTSM007172.6E-12157205IPR001005SANT/Myb domain
PfamPF002492.9E-12159201IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-22160206IPR009057Homeodomain-like
CDDcd001674.73E-9161203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MGRSPCCDKT RVKRGPWSEE EDAILKGFVK RFGNAGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPELRHGG FTDEEDNLIL SLYGEIGSKW SVIASRLPGR TDNDVKNYWN TKLKKRSFVQ  120
RFGNAGNWIA LPQKAGLKRC GKSCRLRWLN YLRPELRHGG FTDEEDNLIL SLYGEIGSKW  180
SVIASRLPGR TDNDVKNYWN TKLKKRFLAS AKRQGTPPPP PSPPSSDDSM TVAADNDSQP  240
QDDQQTPPPP VTPSFDNLDD DEELLLKSEQ LYSELVGLIE PTSTSTTNNA GTSTGEDSSL  300
TASSSSSGTS PAASSSSGSC NAWPMDVQDT TLLSESISSL LSDAHGGDDV FGAADLPASY  360
SFQDLLAASY DEFTTMTQEL YYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-26142079159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-26142079159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
UniProtTranscription factor that functions as regulator of genes affecting cell wall organization and remodeling. Activates genes related to the primary cell wall and represses genes related to the secondary cell wall and expansins. Required for the regulation of longitudinal cell growth in stems, leaves, petioles, roots, flowers and siliques. {ECO:0000269|PubMed:24563287}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462902545
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2413701e-128AK241370.1 Oryza sativa Japonica Group cDNA, clone: J065154C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020393436.11e-107transcription factor MYB2 isoform X1
SwissprotF4JSU01e-61MYB87_ARATH; Transcription factor MYB87
SwissprotQ9FKL22e-61MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A1D6NDK82e-97A0A1D6NDK8_MAIZE; R2R3MYB-domain protein
STRINGGRMZM2G167829_P011e-100(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.16e-63myb domain protein 36
Publications ? help Back to Top
  1. Fujiwara S, et al.
    Chimeric repressor analysis identifies MYB87 as a possible regulator of morphogenesis via cell wall organization and remodeling in Arabidopsis.
    Biotechnol. Lett., 2014. 36(5): p. 1049-57
    [PMID:24563287]
  2. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]