PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462902354
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 162aa    MW: 18813.5 Da    PI: 7.3439
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462902354genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.67.8e-15853248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
        462902354  8 GVWKNTEDEILKAAVMKYGKNQWARISSLVV-RKSAKQCKARWYEWL 53
                     78*****************************.************986 PP
2Myb_DNA-binding31.44.3e-106099244
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                       WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r 
        462902354 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERH 99
                     68*****************99.********8..******8885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.975257IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.1E-19556IPR009057Homeodomain-like
SMARTSM007178.7E-15655IPR001005SANT/Myb domain
PfamPF139218.1E-141070No hitNo description
CDDcd001671.07E-111053No hitNo description
SuperFamilySSF466893.25E-2133108IPR009057Homeodomain-like
CDDcd116591.27E-3055106No hitNo description
Gene3DG3DSA:1.10.10.602.2E-1457104IPR009057Homeodomain-like
SMARTSM007174.4E-1058105IPR001005SANT/Myb domain
PROSITE profilePS5129415.53358107IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLVVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERHE KLLDAACAKD ENYEPNDDPR  120
KLRPGEIDPN PESKPACPDP VDMDEDEKEM LSEARARCQH QG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L1e-8821583159Cell division cycle 5-like protein
5xjc_L1e-8821583159Cell division cycle 5-like protein
5yzg_L1e-8821583159Cell division cycle 5-like protein
5z56_L1e-8821583159Cell division cycle 5-like protein
5z57_L1e-8821583159Cell division cycle 5-like protein
5z58_L1e-8821583159Cell division cycle 5-like protein
6ff4_L1e-8821583159Cell division cycle 5-like protein
6ff7_L1e-8821583159Cell division cycle 5-like protein
6icz_L1e-8821583159Cell division cycle 5-like protein
6id0_L1e-8821583159Cell division cycle 5-like protein
6id1_L1e-8821583159Cell division cycle 5-like protein
6qdv_O1e-8821583159Cell division cycle 5-like protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462902354
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1022480.0AK102248.1 Oryza sativa Japonica Group cDNA clone:J033088F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576174.11e-106cell division cycle 5-like protein
RefseqXP_019232628.11e-107PREDICTED: cell division cycle 5-like protein
SwissprotP929481e-102CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A067DSG91e-107A0A067DSG9_CITSI; Uncharacterized protein
STRINGPavir.Ca02612.1.p1e-107(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2552435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.11e-105cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]