PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462901884
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 331aa    MW: 36956.5 Da    PI: 4.8869
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462901884genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.75.8e-50421722128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....k 96 
                 pGfrFhPtdeelv++yL +kv+gk+l++ e+ik++diyk++PwdLp +++ + +kewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s+     
  462901884  42 LPGFRFHPTDEELVTFYLWRKVAGKRLSI-EIIKDFDIYKHDPWDLPkASTISMDKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIYSAatgrA 140
                69***************************.89***************445555789**************************************976655 PP

        NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                g  +glkk+Lvfy+g+a kg+kt+W+mhe+rl
  462901884 141 GGCIGLKKSLVFYRGSAGKGTKTEWMMHEFRL 172
                556***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-5441199IPR003441NAC domain
PROSITE profilePS5100554.36341199IPR003441NAC domain
PfamPF023658.5E-2543172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MVQDCNLTKE KMDSKMNSDH GDQGEEEVVL VGDEEEGDDM VLPGFRFHPT DEELVTFYLW  60
RKVAGKRLSI EIIKDFDIYK HDPWDLPKAS TISMDKEWYF FCLRGRKYRN SIRPNRVTGS  120
GFWKATGIDR PIYSAATGRA GGCIGLKKSL VFYRGSAGKG TKTEWMMHEF RLPPRPESPG  180
STPSSQEAEV WTICRIFRRS ITYKKQPQIT GTVATAAVAQ PDSSCSITGS LESDTGDEYM  240
NGLPPQAPVN NNVSDVYSSY QFQGQWNSDA VVPPVATACP QPAPAMAGAF HHGPAVQDDL  300
YYKDGCNWDD IGMMVMELTD PSVFYDTTSY A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-474320519171NO APICAL MERISTEM PROTEIN
1ut4_B3e-474320519171NO APICAL MERISTEM PROTEIN
1ut7_A3e-474320519171NO APICAL MERISTEM PROTEIN
1ut7_B3e-474320519171NO APICAL MERISTEM PROTEIN
3swm_A3e-474320522174NAC domain-containing protein 19
3swm_B3e-474320522174NAC domain-containing protein 19
3swm_C3e-474320522174NAC domain-containing protein 19
3swm_D3e-474320522174NAC domain-containing protein 19
3swp_A3e-474320522174NAC domain-containing protein 19
3swp_B3e-474320522174NAC domain-containing protein 19
3swp_C3e-474320522174NAC domain-containing protein 19
3swp_D3e-474320522174NAC domain-containing protein 19
4dul_A3e-474320519171NAC domain-containing protein 19
4dul_B3e-474320519171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462901884
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803594.11e-172transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK551e-79NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A2S3GVN71e-171A0A2S3GVN7_9POAL; Uncharacterized protein
STRINGSi030477m1e-158(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.19e-80NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]