PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462901741 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | Whirly | ||||||||
Protein Properties | Length: 129aa MW: 14253.3 Da PI: 11.3567 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 21 | 5.6e-07 | 63 | 91 | 111 | 139 |
Whirly 111 vtnslvkgnesfsvPvskaefavlrsllv 139 v n+l+k+ +++svP++kaefavlr++l+ 462901741 63 VLNNLQKTTDRLSVPITKAEFAVLRTALS 91 678899********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF08536 | 2.3E-4 | 62 | 88 | IPR013742 | Plant transcription factor |
Gene3D | G3DSA:2.30.31.10 | 6.1E-15 | 62 | 110 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 2.35E-18 | 62 | 129 | IPR009044 | ssDNA-binding transcriptional regulator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
ALFSSRRSER TRSLPPSPAL ASLSSGHLCG DQQGGGTMLR LSRLLPTASR RGIELKDALW 60 SAVLNNLQKT TDRLSVPITK AEFAVLRTAL SFALPHIMGW DQVLTNHHPA PQASKPRVER 120 PHPDSEWER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3n1h_A | 1e-14 | 62 | 106 | 125 | 168 | StWhy2 |
3n1i_A | 1e-14 | 62 | 106 | 125 | 168 | protein StWhy2 |
3n1j_A | 1e-14 | 62 | 106 | 125 | 168 | Protein StWhy2 |
3n1k_A | 1e-14 | 62 | 106 | 125 | 168 | protein StWhy2 |
3n1l_A | 1e-14 | 62 | 106 | 125 | 168 | protein StWhy2 |
3r9y_A | 1e-14 | 62 | 106 | 125 | 168 | Why2 protein |
3r9z_A | 1e-14 | 62 | 106 | 125 | 168 | Why2 protein |
3ra0_A | 1e-14 | 62 | 106 | 125 | 168 | Why2 protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462901741 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004951836.1 | 3e-36 | single-stranded DNA-binding protein WHY2, mitochondrial | ||||
Swissprot | D9J034 | 3e-15 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A0A0A9CVM8 | 4e-37 | A0A0A9CVM8_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ab00418.1.p | 1e-35 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3012 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 3e-15 | WHIRLY 2 |