PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462901323
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 282aa    MW: 31500.2 Da    PI: 5.0024
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462901323genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.42.6e-14311411110
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                lp+G++F+P+d++lv  +L++++ +        ++++ v  ++  +   ++P+d+p  v+ + +  yfF+kr     ++k+++    +  W++ g+ k++
  462901323  31 LPRGVEFNPSDSDLV-WHLAAEIGNYLahrhpfISEFIVpANDDgGFSCTHPQDIP-GVRRDGRASYFFHKRFDVLCNNKNSK----NISWQKVGTPKSI 124
                799************.6788877665534445544434423333358899******.667788999******99876543333....446********** PP

        NAM  93 lskkgelvglkktLvfyk 110
                +  +++l g+k+ +vfy 
  462901323 125 IL-DETLQGCKEEFVFYA 141
                **.999***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-1725147IPR003441NAC domain
PROSITE profilePS5100510.95431181IPR003441NAC domain
PfamPF023651.6E-632146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MELCSSHRCE ARADAWPSDG AVQQPQIWPG LPRGVEFNPS DSDLVWHLAA EIGNYLAHRH  60
PFISEFIVPA NDDGGFSCTH PQDIPGVRRD GRASYFFHKR FDVLCNNKNS KNISWQKVGT  120
PKSIILDETL QGCKEEFVFY ACNPCKDIFN HAETDDLDHM SLKERHIILL ADKSSCPATT  180
SAEKSAAAPK SCSSGKTFEE DAPNNVEGIA YSSRRRRRRK TATDSIEKAL DEDAPGLLQI  240
LINKGIMAEE IKLYGAGEDD EMLPDSTENN FEDLENVITK VR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213218RRRRRR
2213219RRRRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462901323
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228958.16e-52uncharacterized protein LOC100826588 isoform X2
RefseqXP_025795333.16e-53uncharacterized protein LOC112875626 isoform X2
TrEMBLA0A1E5WEI44e-51A0A1E5WEI4_9POAL; NAC domain-containing protein 8
TrEMBLA0A2T8I5T51e-51A0A2T8I5T5_9POAL; Uncharacterized protein
STRINGPavir.Ib00786.1.p4e-52(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74793239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.12e-30NAC family protein