PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462901257 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | GRAS | ||||||||
Protein Properties | Length: 776aa MW: 85811.4 Da PI: 4.793 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 346.9 | 3.3e-106 | 395 | 767 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l++ L++cA+av++gdl+ a+++L+++++++sp+gd++qR+a++f+e+L+arla+++s +y++l +++ts +++ l+a+klf +s + k +h 462901257 395 LRTMLIHCAQAVATGDLRSAHEMLKQIKQHSSPRGDATQRMAHCFAEGLEARLAGTGSLVYQSLVSKRTS---VVDFLKAYKLFMAASAFKKAQHTFSTM 491 5789*************************************************************99999...*************************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 +Il+av+g +++Hi+ +++++G+QWp Ll+ La R++gpp++R Tg++ p++g + +le+tgerL++ A++++vpf+f++ +a ++e+++ ++L+++p 462901257 492 TILNAVAGRSKLHIVEYGVQHGFQWPGLLHFLAGREGGPPEVRFTGIDLPQPGfrPAYQLEKTGERLSNCARQFRVPFKFHA-IAAKWETVTAQDLNIDP 590 ****************************************************9999**************************.799************** PP GRAS 199 gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 +E+l+Vn+ +l+desv ++s +rd vL+ +++++P+v+v++ + +++ Fl+rf eal +ysa fd+l+a++pr+++ r +E+ l+gr++ n 462901257 591 DEVLVVNCECFFDKLMDESVLVDSpsPRDVVLSNIRNMRPNVFVHCVVNGTFGAPFFLTRFREALFFYSAHFDMLDATIPRDNDVRLLIEQDLIGRSALN 690 *******************98887779************************************************************************* PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 v+acega+r+ r et+++W+ r ++aG++++pls ++++ ++ +r+++ + + ++e++ +l++gWk+r L+++S W 462901257 691 VIACEGADRVDRPETYKQWQVRNNRAGLRQLPLSPEVVNIVRGKVRNYYHKDFLLDEDHRWLLQGWKGRVLYAMSTW 767 *************************************************889************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 62.042 | 369 | 748 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-103 | 395 | 767 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 776 aa Download sequence Send to blast |
MAATPEEFLG QGAFLAVPEP FSPSVFLDLP PTPRPDGDDD PASSDDLVLP FISHMLMEED 60 IDDKFFYQYP DHPALLNAQQ PYAQILSDAT TSSSSDSAAT TLSPSCSSDA PASAEPTWPY 120 DPIELAQLLR SPPYTDMGVG LDDFGADDLS AVLLPAQDGA TPGFQQSPLT VNSDGSGGQA 180 QGASFAGEAV QSSVYLGGAK EEQDDAKANI TTLPTSDEAL ASAFFGGHKG VNMDMLNRAF 240 AQGMEEAKKF LPANNALFID LEATTTGERL LSTDSKPKGG LMLMTRQVKE EETVADEMPT 300 MFRESSNGRG RKNRHHGEDL EAETGRSSKQ MMQEEQEETG AQEMYTELMS CNYEDFVKRM 360 EDLRVAMDSE SEKSSRRGSG KGARGRQRAD DVVDLRTMLI HCAQAVATGD LRSAHEMLKQ 420 IKQHSSPRGD ATQRMAHCFA EGLEARLAGT GSLVYQSLVS KRTSVVDFLK AYKLFMAASA 480 FKKAQHTFST MTILNAVAGR SKLHIVEYGV QHGFQWPGLL HFLAGREGGP PEVRFTGIDL 540 PQPGFRPAYQ LEKTGERLSN CARQFRVPFK FHAIAAKWET VTAQDLNIDP DEVLVVNCEC 600 FFDKLMDESV LVDSPSPRDV VLSNIRNMRP NVFVHCVVNG TFGAPFFLTR FREALFFYSA 660 HFDMLDATIP RDNDVRLLIE QDLIGRSALN VIACEGADRV DRPETYKQWQ VRNNRAGLRQ 720 LPLSPEVVNI VRGKVRNYYH KDFLLDEDHR WLLQGWKGRV LYAMSTWVAD DNNSIS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 6e-43 | 401 | 767 | 24 | 377 | Protein SCARECROW |
5b3h_D | 6e-43 | 401 | 767 | 24 | 377 | Protein SCARECROW |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462901257 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137064 | 6e-34 | AC137064.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence. | |||
GenBank | AK102199 | 6e-34 | AK102199.1 Oryza sativa Japonica Group cDNA clone:J033087D22, full insert sequence. | |||
GenBank | AP014967 | 6e-34 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826965.1 | 0.0 | scarecrow-like protein 34 | ||||
TrEMBL | A0A2T7CRC2 | 0.0 | A0A2T7CRC2_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T8IAF6 | 0.0 | A0A2T8IAF6_9POAL; Uncharacterized protein | ||||
STRING | Si025985m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-144 | SCARECROW-like 14 |