PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462901218
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family Trihelix
Protein Properties Length: 499aa    MW: 54799.6 Da    PI: 5.9671
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462901218genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix668e-211691787
   trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
               m+ ++r+++lk+plWe+vs+k+++ g++rs+k+C+ek+en+ k+yk++k+g+ +r  ++ + +++f++lea
  462901218  1 MDAAFREAALKGPLWEDVSRKLAAMGYKRSAKKCREKFENVDKYYKRTKDGRAGR--GDGKAYRFFSELEA 69
               6889*************************************************97..66667******985 PP
2trihelix100.81.1e-31224305587
   trihelix   5 qevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 ev+aLi++r+e+e r++++  k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy++qlea
  462901218 224 AEVHALIQLRTELEARYQDSGPKGPLWEDISAGMRRLGYSRSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYYHQLEA 305
                69****************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122039.08E-17149No hitNo description
PfamPF138374.6E-15470No hitNo description
PfamPF138371.5E-21223306No hitNo description
CDDcd122033.76E-26224284No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MDAAFREAAL KGPLWEDVSR KLAAMGYKRS AKKCREKFEN VDKYYKRTKD GRAGRGDGKA  60
YRFFSELEAL HGGASSSSPR PPPASLAPIS PPPADPPPVV VATTMAPPAV ATPPCMAGLS  120
FSSSSDGEDT DETGGDVDGG KRKRRGDGGG SNKMMRFFEG LMRQVMERQE EMQQRFIEAI  180
ERREQDRMIR EEAWRRQEVA RLAREQDALA QERAMAASRD AAVAEVHALI QLRTELEARY  240
QDSGPKGPLW EDISAGMRRL GYSRSAKRCK EKWENINKYF KKVKESNKKR PEDSKTCPYY  300
HQLEALYRSK ALASASTSSP HPPPPRPADT VLAAVPLSSQ NPPQDVHKNN NGNGYASPAG  360
NNCGMQTQQG TNGGNGTPAK KQQQQEEEED IIMKETPMAE ETTPQPVSMN DSYVNDRMDA  420
GDSDSMDDDD EDDFDDDEGD VGGGGNSNKM QYEIQFQRQQ QQSHSQSSVV RPNAATAGAG  480
SGPGPATTTG TSFLTMVHH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462901218
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2329022e-97AC232902.1 Oryza officinalis clone OO__Ba0128B10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791925.11e-104trihelix transcription factor GTL1-like
SwissprotQ391175e-48TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLM0RP321e-133M0RP32_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P03520_0011e-134(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-41Trihelix family protein