PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462901034 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB | ||||||||
Protein Properties | Length: 384aa MW: 41920.9 Da PI: 9.7771 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.1 | 1.5e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed +l+ +++++G +W++ ++ g+ R++k+c++rw +yl 462901034 16 RGSWTPQEDMRLIAYIQKHGHANWRALPKQAGLLRCGKSCRLRWINYL 63 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.2 | 6.6e-17 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e +++++ +lG++ W++Ia++++ gRt++++k+ w+++l 462901034 69 RGNFTAEEEETIIKLHGMLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.36 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.11E-30 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-12 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-15 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-23 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.25E-10 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.834 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 9.9E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-15 | 69 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-26 | 71 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.08E-11 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MGRGRAPCCA KVGLNRGSWT PQEDMRLIAY IQKHGHANWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDLKRG NFTAEEEETI IKLHGMLGNK WSKIAACLPG RTDNEIKNVW NTHLKKRVAQ 120 REKQKPGAAK SEGTTSGDAG TPNTSSSASS STTTANSSGG GGGDAGEQCG TSKEPDTIDL 180 PPLESDIDIS DMLVDTPTEA LTTCAGGGVV EDLIELPVID IEPEIWSIID GDGADVPDVA 240 GARRGDATVP CTGHAVSTSE AGEANDWWLE NLEKELGLWA PTEDSQAQSD LLGHMSFPVP 300 LGDTEGDPVS TYFQCGPTTA ELQEKKKKKK KKKKKKKKKK KKKKKKKKKK KKKKGGVLYL 360 PQKLCRIVDL WLTQPVKTQT IRDK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-26 | 14 | 118 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 339 | 353 | KKKKKKKKKKKKKKK |
2 | 340 | 353 | KKKKKKKKKKKKKK |
3 | 344 | 353 | KKKKKKKKKK |
4 | 345 | 353 | KKKKKKKKK |
5 | 347 | 353 | KKKKKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00144 | DAP | Transfer from AT1G16490 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462901034 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679437 | 1e-146 | HF679437.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB31 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814304.1 | 1e-161 | myb-related protein Zm1-like | ||||
Swissprot | P20024 | 1e-153 | MYB1_MAIZE; Myb-related protein Zm1 | ||||
TrEMBL | A0A0A9HFK4 | 1e-170 | A0A0A9HFK4_ARUDO; Uncharacterized protein | ||||
STRING | GRMZM5G833253_P01 | 1e-152 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2154 | 37 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16490.1 | 8e-71 | myb domain protein 58 |
Publications ? help Back to Top | |||
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