PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462900874 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 213aa MW: 24683.8 Da PI: 10.7605 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.9 | 4.8e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ri+n +nrqvtfskRr g++KKA EL +LCda+v +i+fs tg+lye+ss 462900874 9 ERIDNRTNRQVTFSKRRSGLMKKARELGILCDADVGLIVFSCTGRLYEFSS 59 69***********************************************96 PP | |||||||
2 | K-box | 73.5 | 5.9e-25 | 84 | 171 | 11 | 98 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 a+a+ +q+e++ L+++++nLq ++RhllGe+L+ L+ ++Lq L++q+e sl++iR+kK++ll e+i +l +k lq+en +L+k++ 462900874 84 IAEAKFWQREVTTLRQQVQNLQLNNRHLLGEELSGLTARDLQFLQSQVEMSLQSIRKKKEQLLAEEIMQLNQKGLVLQKENIELKKEV 171 57889********************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.9E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.202 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.32E-32 | 2 | 80 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.54E-40 | 2 | 71 | No hit | No description |
PRINTS | PR00404 | 1.4E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.6E-23 | 86 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.849 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MGRGKIAIER IDNRTNRQVT FSKRRSGLMK KARELGILCD ADVGLIVFSC TGRLYEFSST 60 SMKSIIERYQ EAREENNCRL LNRIAEAKFW QREVTTLRQQ VQNLQLNNRH LLGEELSGLT 120 ARDLQFLQSQ VEMSLQSIRK KKEQLLAEEI MQLNQKGLVL QKENIELKKE VSIAHRHKME 180 LQKKGKALRV IANKLAEALI KLTERNKKIG MHA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 6e-23 | 1 | 87 | 1 | 87 | MEF2C |
5f28_B | 6e-23 | 1 | 87 | 1 | 87 | MEF2C |
5f28_C | 6e-23 | 1 | 87 | 1 | 87 | MEF2C |
5f28_D | 6e-23 | 1 | 87 | 1 | 87 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462900874 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967658.1 | 1e-106 | MADS-box transcription factor 25 isoform X1 | ||||
Refseq | XP_022682316.1 | 1e-106 | MADS-box transcription factor 25 isoform X1 | ||||
Swissprot | Q84NC5 | 1e-98 | MAD25_ORYSJ; MADS-box transcription factor 25 | ||||
TrEMBL | A0A368R0W5 | 1e-105 | A0A368R0W5_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J07457.1.p | 1e-114 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP614 | 35 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14210.1 | 3e-64 | AGAMOUS-like 44 |
Publications ? help Back to Top | |||
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