PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462900835 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 295aa MW: 33490.2 Da PI: 9.3543 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 76.3 | 2.3e-24 | 41 | 78 | 1 | 38 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevavi 38 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i 462900835 41 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALI 78 79***********************************9 PP | |||||||
2 | K-box | 102.3 | 6.5e-34 | 108 | 204 | 5 | 100 |
K-box 5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s++ ++e +a+++qqe+akL++ i++Lq+++R l+G+ ++++sl++L+qLe +Le++++kiR++Knell+++++++qk+e el+++n +Lr+k++e 462900835 108 SNTGtVAEVNAQYYQQESAKLRQTISSLQNSNRTLVGDAINTMSLRDLKQLEGRLERGINKIRARKNELLYAEVDYMQKREMELHSDNLYLRTKVAE 204 33335999**************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.0E-28 | 33 | 95 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.31 | 33 | 78 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.20E-34 | 34 | 104 | No hit | No description |
PRINTS | PR00404 | 8.0E-23 | 35 | 55 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.66E-23 | 35 | 102 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-20 | 42 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-23 | 55 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-23 | 70 | 91 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.1E-25 | 117 | 202 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.361 | 118 | 208 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MLNMMADLSC GPSKVKEQPT PANSGPSAGS DKPARGKIEI KRIENTTNRQ VTFCKRRNGL 60 LKKAYELSVL CDAEVALIGS QLLNSVHTLY LFVKATIERY KKANTDTSNT GTVAEVNAQY 120 YQQESAKLRQ TISSLQNSNR TLVGDAINTM SLRDLKQLEG RLERGINKIR ARKNELLYAE 180 VDYMQKREME LHSDNLYLRT KVAENERGHE QPMGMQMEAA STSEYEHMVP YDSRNFLQVS 240 IMQQPQNYSH HLQPTTLQLG SNQKAPKYMC ARNFYHLSVL SQLLVLLGVR ELDNI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n6j_A | 2e-14 | 34 | 99 | 1 | 63 | Myocyte-specific enhancer factor 2B |
1n6j_B | 2e-14 | 34 | 99 | 1 | 63 | Myocyte-specific enhancer factor 2B |
1tqe_P | 2e-14 | 34 | 99 | 2 | 64 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-14 | 34 | 99 | 2 | 64 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-14 | 34 | 99 | 2 | 64 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-14 | 34 | 99 | 2 | 64 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-14 | 34 | 99 | 2 | 64 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-14 | 34 | 99 | 2 | 64 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-14 | 34 | 99 | 2 | 64 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-14 | 34 | 99 | 2 | 64 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-14 | 34 | 99 | 2 | 64 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-14 | 34 | 99 | 2 | 64 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269|PubMed:11828031, ECO:0000269|PubMed:16326928, ECO:0000269|PubMed:9869408}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462900835 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816639.1 | 1e-147 | MADS-box transcription factor 3 isoform X2 | ||||
Swissprot | Q40704 | 1e-124 | MADS3_ORYSJ; MADS-box transcription factor 3 | ||||
TrEMBL | A0A0A8XZ73 | 1e-156 | A0A0A8XZ73_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ea00226.1.p | 1e-142 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP649 | 37 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 6e-93 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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