PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462900773
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 380aa    MW: 42329.8 Da    PI: 6.5075
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462900773genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.77.3e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv      G  +W+++++  g+ R++k+c++rw +yl
        462900773 14 KGPWTAEEDQKLVSFLLANGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding54.82.1e-1770111447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++eE+   +++++qlG++ W++Ia++++ gRt++++k++w+++
        462900773  70 LSEEEERTVIELHEQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111
                      599****************.*********.************97 PP
3Myb_DNA-binding54.82.1e-17158199447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++eE+   +++++qlG++ W++Ia++++ gRt++++k++w+++
        462900773 158 LSEEEERTVIELHEQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 199
                      599****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-19563IPR009057Homeodomain-like
PROSITE profilePS5129413.892961IPR017930Myb domain
SuperFamilySSF466893.79E-2711108IPR009057Homeodomain-like
SMARTSM007171.0E-111363IPR001005SANT/Myb domain
PfamPF002491.6E-131461IPR001005SANT/Myb domain
CDDcd001672.17E-71661No hitNo description
PROSITE profilePS5129428.3562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-2564116IPR009057Homeodomain-like
SMARTSM007171.2E-1666114IPR001005SANT/Myb domain
PfamPF002491.3E-1570111IPR001005SANT/Myb domain
CDDcd001674.62E-1271112No hitNo description
SuperFamilySSF466895.84E-22136209IPR009057Homeodomain-like
PROSITE profilePS500904.17136149IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.9E-9136163IPR009057Homeodomain-like
PROSITE profilePS5129428.35150204IPR017930Myb domain
SMARTSM007171.2E-16154202IPR001005SANT/Myb domain
PfamPF002491.3E-15158199IPR001005SANT/Myb domain
CDDcd001674.62E-12159200No hitNo description
Gene3DG3DSA:1.10.10.602.0E-21164201IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAE EDQKLVSFLL ANGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SEEEERTVIE LHEQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLTPTA  120
SAAGAPCPSS PVRLLRCGKS CRLRWTNYLR PDLKRGLLSE EEERTVIELH EQLGNRWSKI  180
ASHLPGRTDN EIKNHWNTHI KKKLRKMGID PVTHKPLQPN SPPPPPQQPS QQPEVEEEEK  240
AAAVAVAGFG NDAFCTDEVS TAQLLDDIVL PCDVLGAPAP TYGIGTASSP ESSSSSLSSS  300
FYTGAAAQAS SGDSSSSIVD GEWQDLSQMV MEWPESMWLD DVVVTGPASW EFEDPFVTYQ  360
RIALFDHQEE AWNGSKPQLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-32122044159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-32122044159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462900773
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0646791e-133AK064679.1 Oryza sativa Japonica Group cDNA clone:002-115-H05, full insert sequence.
GenBankY113511e-133Y11351.1 O.sativa mRNA for myb factor, 1402 bp.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802264.16e-98transcription factor MYB20-like
SwissprotQ9C7U73e-73MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A2S3GZJ91e-96A0A2S3GZJ9_9POAL; Uncharacterized protein
STRINGSi031939m8e-93(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.11e-74myb domain protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]