PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462900732 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 203aa MW: 23369.2 Da PI: 10.4482 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 100.6 | 5.9e-32 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ 462900732 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58 79**********************************************95 PP | |||||||
2 | K-box | 103.6 | 2.5e-34 | 95 | 181 | 12 | 98 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++s++qe+++Lk++ e+Lqr+qRh+lGedL++L++keLqqLe+qLe +l++ R+kK+++++eq++el++ke++l e nk+L++k+ 462900732 95 GESQSWHQEMSRLKAKFESLQRSQRHMLGEDLGPLNIKELQQLEKQLEYALSQARQKKTQIMMEQVDELRRKERQLGELNKQLKNKV 181 5789********************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.571 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.06E-31 | 2 | 85 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.38E-41 | 2 | 87 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.1E-31 | 96 | 181 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.985 | 97 | 187 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 203 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSA 60 GYGPTALLDR MVNKTLEKYH DFCYNAQGSN TCFGGESQSW HQEMSRLKAK FESLQRSQRH 120 MLGEDLGPLN IKELQQLEKQ LEYALSQARQ KKTQIMMEQV DELRRKERQL GELNKQLKNK 180 VGWKLKVAVA TKLPKPPGLL MPP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 3e-20 | 99 | 182 | 19 | 102 | Developmental protein SEPALLATA 3 |
4ox0_B | 3e-20 | 99 | 182 | 19 | 102 | Developmental protein SEPALLATA 3 |
4ox0_C | 3e-20 | 99 | 182 | 19 | 102 | Developmental protein SEPALLATA 3 |
4ox0_D | 3e-20 | 99 | 182 | 19 | 102 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269|PubMed:19820190}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462900732 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB007505 | 2e-71 | AB007505.1 Triticum aestivum TaMADS#12 mRNA for MADS box transcription factor, complete cds. | |||
GenBank | AM502873 | 2e-71 | AM502873.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM9B (WM9B gene). |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824169.1 | 1e-107 | MADS-box transcription factor 17-like | ||||
Swissprot | Q7XUN2 | 1e-103 | MAD17_ORYSJ; MADS-box transcription factor 17 | ||||
TrEMBL | A0A2S3I9M9 | 1e-106 | A0A2S3I9M9_9POAL; Uncharacterized protein | ||||
STRING | Si010898m | 1e-106 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4187 | 35 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45650.1 | 2e-78 | AGAMOUS-like 6 |
Publications ? help Back to Top | |||
---|---|---|---|
|