PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462900222 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 250aa MW: 28111.8 Da PI: 9.0538 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 100 | 9.2e-32 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRrng+lKKA+E+SvLCdaeva+i+fs++gklye++s 462900222 9 KRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVALIVFSTKGKLYEFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 93 | 5.1e-31 | 86 | 172 | 12 | 98 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++++ +e+++Lk++++ q++qR+llGe+L+sL+ keLqqLeqqL++slk+iRs+Kn+l++++i+elqkkek l ++n aL+k + 462900222 86 EDQANWGEEYTRLKSKLDAVQKSQRQLLGEQLDSLTTKELQQLEQQLDSSLKHIRSRKNQLMFDSISELQKKEKLLTDQNGALQKLM 172 67899*****************************************************************************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.319 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.5E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.87E-44 | 2 | 74 | No hit | No description |
SuperFamily | SSF55455 | 2.75E-34 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.3E-29 | 87 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.847 | 88 | 179 | IPR002487 | Transcription factor, K-box |
Gene3D | G3DSA:1.10.533.10 | 4.9E-4 | 113 | 199 | IPR011029 | Death-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAHEISVLCD AEVALIVFST KGKLYEFASN 60 GSMEGILERY QRYSFEERAV LDPSIEDQAN WGEEYTRLKS KLDAVQKSQR QLLGEQLDSL 120 TTKELQQLEQ QLDSSLKHIR SRKNQLMFDS ISELQKKEKL LTDQNGALQK LMKAEKEKNN 180 ALLNIIERQN GASTSSPSPP PATVPDSMPP LNTGPCQPNG AGEESEPEPS PAQANHGKLP 240 PWMLSNVSNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 3e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 3e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 3e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor that may promote floral transition phase and differentiation program of the vegetative shoot. {ECO:0000269|PubMed:11971906, ECO:0000269|PubMed:15299121}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00096 | ChIP-seq | Transfer from AT1G69120 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462900222 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004958248.1 | 1e-146 | MADS-box transcription factor 18 | ||||
Swissprot | A2YNI2 | 1e-130 | MAD18_ORYSI; MADS-box transcription factor 18 | ||||
Swissprot | Q0D4T4 | 1e-130 | MAD18_ORYSJ; MADS-box transcription factor 18 | ||||
TrEMBL | A0A1L5YFA1 | 1e-150 | A0A1L5YFA1_PANVG; APL3 | ||||
STRING | Pavir.Ba00457.1.p | 1e-150 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1151 | 37 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 2e-68 | MIKC_MADS family protein |