PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462899904

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C3H

Protein Properties

Length: 302aa MW: 34084.4 Da PI: 11.2908

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462899904	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32	2.1e-10	196	218	2	24
-S---SGGGGTS--TTTTT-SS- CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFa 24 + ++C+f+++tG+Ck+G CkF+ 462899904 196 DKPECQFYMKTGECKFGVVCKFH 218 6799******************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	9.817	194	222	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.7E-7	196	218	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MPQPCCALAR APPRRGEGER QGGGEIWPAA RKRRGRSGLR RIRGGGPGQI RSVARKKRGN 60 PAGSEEEERG DAVAGGWRRG RGGRDAAAAE VGHWRRRREE ELRHHPPSCP GLVAPWPRSA 120 SARKMRGRSG LRPVRGGGPG EIRPAARKKR GDLEAYLLYS QSTKLIRKRY PKFSKKKSWL 180 GLYAVHRENV FLDRPDKPEC QFYMKTGECK FGVVCKFHIS KDQIVPIPNF QSNCHYARES 240 PYALSILAIK CASFVLNANS IIQCKPSCTA LLHKQPVRSQ LLDVCWHMYH HIHIVFRPHI 300 RS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462899904

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT018914	6e-38	BT018914.1 Zea mays clone EL01T0403G12.d mRNA sequence.
GenBank	BT040571	6e-38	BT040571.1 Zea mays full-length cDNA clone ZM_BFc0101B05 mRNA, complete cds.
GenBank	BT063643	6e-38	BT063643.1 Zea mays full-length cDNA clone ZM_BFc0089D01 mRNA, complete cds.
GenBank	BT067452	6e-38	BT067452.1 Zea mays full-length cDNA clone ZM_BFc0051N01 mRNA, complete cds.
GenBank	JX428473	6e-38	JX428473.1 Zea mays subsp. mays clone pUT3069 C3H11 C3H type transcription factor mRNA, partial cds.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16540.3	4e-17	zinc finger nuclease 3