PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462899802 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | bHLH | ||||||||
Protein Properties | Length: 205aa MW: 22378.8 Da PI: 7.2546 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.3 | 0.00033 | 163 | 182 | 36 | 55 |
S-STCHHHHHHHHHHHHHHH CS HLH 36 kKlsKaeiLekAveYIksLq 55 + s a++L +Ave+I+ Lq 462899802 163 RQTSTADMLDLAVEHIRGLQ 182 4599***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.3E-5 | 161 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-5 | 162 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
SLPRHSSSPP GFFSSPVVDN GFPSARVGGN EVHQTMSTYN KKMKSPMNLA RQGTLAQISE 60 DVTEHMHAIG PSEESITTSN VVRSFSGGFS IGSWEDSNSI AFSSPSSKAG IHNNDDIIAT 120 LSNYELQFGV TKEANLQMQQ DQVPFRVRAK RGCATHPRSI AERQTSTADM LDLAVEHIRG 180 LQSEVQALKE DKEKCTCRGN HSSRN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462899802 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825346.1 | 2e-99 | transcription factor bHLH129-like | ||||
TrEMBL | A0A2S3I7V0 | 4e-98 | A0A2S3I7V0_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7CWM6 | 3e-98 | A0A2T7CWM6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb01377.1.p | 5e-95 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14188 | 20 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05805.1 | 6e-25 | bHLH family protein |