PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462899661 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | GRAS | ||||||||
Protein Properties | Length: 1145aa MW: 128329 Da PI: 6.8188 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 341.4 | 1.5e-104 | 293 | 660 | 3 | 370 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 +l + cA+av++gd + a +lL ++++++sp+gd++qRla++f+e+L+arla+++se+yk+l +++ts + e l+a++l+ ++ + +++ N++I 462899661 293 NLCIYCAQAVATGDRRSAIELLRQIKQHSSPSGDATQRLAHCFAEGLEARLAGTGSEVYKSLMSKRTS---VMEYLKAYQLYLAACCFRMMAFKFSNKTI 389 56688*********************************************************999999...9**************************** PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 + ++g ++vHi+D+++ +G+QWp+Ll++La+R++gpp++RiTg++ p++g + +leetg+rL++ A+++gvpf+f+ +a ++e+++ ++L+++p+E 462899661 390 FNLIAGRKKVHIVDYGMHYGFQWPNLLRSLADREGGPPEVRITGIDLPQPGfrPAARLEETGRRLSSRARQFGVPFKFHS-IAAKWEMVRADDLNIDPDE 488 **************************************************9*9***************************.799**************** PP GRAS 201 alaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 +l+Vn +++l +llde +l+s +rd vL+ +++++P+ +++ + +hns+ F++rf ea+ yysa+fd ++a+ pr++e+r vEr l+g ++ nvv 462899661 489 VLIVNGIVHLANLLDEGNDLDSlsPRDVVLNNIRKMQPDAFILFVMNGSHNSPFFVTRFREAMFYYSAMFDIMDATTPRDNEQRLLVERDLFGSAALNVV 588 ****************99999988**************************************************************************** PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 aceg +r+er et+++W+ r ++aG++p+pl+ +a+k ++ +r + + + ++ ++++l+ gWk+r L+++ 462899661 589 ACEGLDRVERPETYKQWHVRNQRAGLRPLPLDPEAVKHVRETVRSQYHKDFVIDMDRQWLLEGWKGRVLYAI 660 ***********************************************888*******************985 PP | |||||||
2 | GRAS | 349.5 | 5.3e-107 | 766 | 1136 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +l + cA+av++gd + a +lL ++++++sp+gd++qRla++f+e+L+arla+++se+yk+l +++ts + e l a+kl+ ++ + +++ N+ 462899661 766 NLCIYCAQAVATGDRRSAMELLRQIKQHSSPSGDATQRLAHCFAEGLEARLAGTGSEVYKSLMSKRTS---VMEYLEAYKLYLAACCFRMMAFKFSNK 860 56688*********************************************************999999...9************************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 +I + ++g ++vHi+D+++ +G+QWp+Ll++La+R++gpp++RiTg++ p++g + +leetg+rL++ A+++gvpf+f+ +a ++e++++++L++ 462899661 861 TIFNLIAGRKKVHIVDYGMHYGFQWPNLLRSLADREGGPPEVRITGIDLPQPGfrPAARLEETGRRLSSRARQFGVPFKFHS-IAAKWEMVRVDDLNI 957 ****************************************************9*9***************************.799************ PP GRAS 197 kpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +p+E+l+Vn +++l +llde +l+s +rd vL+ +++++P+ +++ + +hns+ F++rf ea+ yysa+fd ++a+ pr++e+r vEr l+g 462899661 958 DPDEVLIVNGIVHLANLLDEGNDLDSlsPRDVVLNNIQKMRPDAFILFVMNGSHNSPFFVTRFREAMFYYSAMFDIMDATTPRDNEQRLLVERDLFGS 1055 ********************99999988********************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++ nvvaceg +r+er et+++W+ r +aG++p+pl+ +a+k ++ +r + + + ++ ++++l+ gWk+r L+++SaW 462899661 1056 AALNVVACEGLDRVERPETYKQWHVRNLRAGLRPLPLDLEAVKHVRETVRSQYHKDFVIDMDRQWLLEGWKGRVLYAMSAW 1136 *****************************************************888************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 62.52 | 265 | 644 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.3E-102 | 293 | 660 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 62.064 | 738 | 1117 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.8E-104 | 766 | 1136 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 1145 aa Download sequence Send to blast |
MAASPEESVE PFSPSLFLDL PPTPRPDGGG GGDPASSDDL VLPYISRMLM EDDIDDKFFY 60 QYPDHPVLLQ AQEPYAKILS DAATGSSSSS SGSATTNADG GSGRSTLSPS SSSGAAASGG 120 AIWPDDPIEL AQLLRSPPCP EMKVGLNGFT AEDVSSFFPA QDGATEGLQH SSIQLGNASS 180 AGDNRVHSPA TSEEEMKTKS TANLLSADGR KNRQDWDNLE AETGRNSKLM MREPEESGEI 240 VDKIVFNGYE LCLKEMQGLR IAMGSDAKKN TRKGDRKSGK GRQSTSQVVD LHNLCIYCAQ 300 AVATGDRRSA IELLRQIKQH SSPSGDATQR LAHCFAEGLE ARLAGTGSEV YKSLMSKRTS 360 VMEYLKAYQL YLAACCFRMM AFKFSNKTIF NLIAGRKKVH IVDYGMHYGF QWPNLLRSLA 420 DREGGPPEVR ITGIDLPQPG FRPAARLEET GRRLSSRARQ FGVPFKFHSI AAKWEMVRAD 480 DLNIDPDEVL IVNGIVHLAN LLDEGNDLDS LSPRDVVLNN IRKMQPDAFI LFVMNGSHNS 540 PFFVTRFREA MFYYSAMFDI MDATTPRDNE QRLLVERDLF GSAALNVVAC EGLDRVERPE 600 TYKQWHVRNQ RAGLRPLPLD PEAVKHVRET VRSQYHKDFV IDMDRQWLLE GWKGRVLYAI 660 DSKVKETVDE TLFSQRSGNG RGRKNRQDLD YLEAETGRNS KLMMREPEES GEIVDETVFN 720 GYELCLKEMQ GLRIAMGSDA KKNTRKGDRK SGKGRQSTSQ VVDLHNLCIY CAQAVATGDR 780 RSAMELLRQI KQHSSPSGDA TQRLAHCFAE GLEARLAGTG SEVYKSLMSK RTSVMEYLEA 840 YKLYLAACCF RMMAFKFSNK TIFNLIAGRK KVHIVDYGMH YGFQWPNLLR SLADREGGPP 900 EVRITGIDLP QPGFRPAARL EETGRRLSSR ARQFGVPFKF HSIAAKWEMV RVDDLNIDPD 960 EVLIVNGIVH LANLLDEGND LDSLSPRDVV LNNIQKMRPD AFILFVMNGS HNSPFFVTRF 1020 REAMFYYSAM FDIMDATTPR DNEQRLLVER DLFGSAALNV VACEGLDRVE RPETYKQWHV 1080 RNLRAGLRPL PLDLEAVKHV RETVRSQYHK DFVIDMDRQW LLEGWKGRVL YAMSAWVADD 1140 SKNFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 7e-43 | 296 | 1136 | 9 | 374 | GRAS family transcription factor containing protein, expressed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462899661 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021316532.1 | 0.0 | scarecrow-like protein 9 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-145 | GRAS family protein |