PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462899372
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family LBD
Protein Properties Length: 104aa    MW: 11049.9 Da    PI: 8.6293
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462899372genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.82.3e-302102196
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C++ Cvl+p +     ++ q++++ +v+k+FG++ ++  l+a+p ++r+++++sl+yeA+ r+ +Pv+Ga+g++++++++l+q++a+++
  462899372   2 SCNGCRVLRKGCSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLAAVPLQHRPALFRSLLYEACGRTINPVSGAIGLMWTGNWDLCQAAADAV 101
                6*********************9999888899****************************************************************9987 PP

     DUF260  96 l 96 
                l
  462899372 102 L 102
                6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.3331104IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-242100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLQHR  60
PALFRSLLYE ACGRTINPVS GAIGLMWTGN WDLCQAAADA VLRG
Cis-element ? help Back to Top
SourceLink
PlantRegMap462899372
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3666861e-122AK366686.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2045L18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651596.12e-70PREDICTED: LOB domain-containing protein 37-like
RefseqXP_015628211.13e-70LOB domain-containing protein 38
SwissprotQ9FN114e-53LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A0E0KG354e-69A0A0E0KG35_ORYPU; Uncharacterized protein
STRINGOPUNC03G23160.16e-70(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84503041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.12e-55LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]