PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462899293

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

BES1

Protein Properties

Length: 630aa MW: 71403.2 Da PI: 6.2412

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462899293	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	76.4	9.1e-24	35	83	4	52
DUF822 4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlk 52 g++++++E+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+ 462899293 35 GEREREREKERTKLRERHRRAITSRMLAGLRQHGNFPLPARADMNDVLR 83 67899*******************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	6.2E-22	35	83	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
Gene3D	G3DSA:3.20.20.80	4.2E-169	190	625	IPR013781	Glycoside hydrolase, catalytic domain
SuperFamily	SSF51445	9.63E-163	190	624	IPR017853	Glycoside hydrolase superfamily
Pfam	PF01373	4.5E-82	213	584	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.5E-53	228	242	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.5E-53	249	267	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.5E-53	271	292	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.5E-53	364	386	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.5E-53	437	456	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.5E-53	471	487	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.5E-53	488	499	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.5E-53	506	529	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.5E-53	544	566	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 630 aa Download sequence Send to blast
DEASLSPPPP PHRRPRGFAS ATSPSAGSTP PRRRGERERE REKERTKLRE RHRRAITSRM 60 LAGLRQHGNF PLPARADMND VLRNHLSLIN PSTSPSPPQL DGTFYPAPVD TPSLTNTLNS 120 YAIGTPLDSQ ASVLHTDDSL SPSSLDSVVV AEQSIKNENY GNSSSVNSLN CMESDQLMRS 180 SAVLADDYTR TPYIPVYASL RIGIINSHCQ LVDPESVRAE LRHLKSLNVD GVIVDCWWGI 240 VEAWTPRKYE WSGYRDLFGI IKEFKLKVQV VLSFHGSGET GSGDVLISLP KWIMEIGQEN 300 QDIFFTDREG RRNTEYLSWG IDKERVLCGR TGIEVYFDFM RSFHMEFRNL TEEGLIFAIE 360 IGMGASGELR YPSIPERMGW RYPGIGEFQC YDRYMQKNLR QSALTRGHLY WARGPDNAGY 420 YNSRPHETGF FCDGGDYDSY YGRFFLNWYS GVLIDHVDPV LSLATLAFDG AKIVVKIPSM 480 YWWYKTASHA AELTAGFYNP TNRDGYSPVF RMLRKHSVLL KLTCYGPEYA VQDNDEAFAD 540 PEGLTWQVMN AAWDHGLSLC IESVLPCLDG DIYSQILNTA KPRNDPDRHH ASFFAYRQQP 600 PFISQRDVYF SELSSLVKCM HGEAPQNEEG

Sequence ? help Back to Top

Protein Sequence Length: 630 aa Download sequence Send to blast

DEASLSPPPP PHRRPRGFAS ATSPSAGSTP PRRRGERERE REKERTKLRE RHRRAITSRM  60
LAGLRQHGNF PLPARADMND VLRNHLSLIN PSTSPSPPQL DGTFYPAPVD TPSLTNTLNS  120
YAIGTPLDSQ ASVLHTDDSL SPSSLDSVVV AEQSIKNENY GNSSSVNSLN CMESDQLMRS  180
SAVLADDYTR TPYIPVYASL RIGIINSHCQ LVDPESVRAE LRHLKSLNVD GVIVDCWWGI  240
VEAWTPRKYE WSGYRDLFGI IKEFKLKVQV VLSFHGSGET GSGDVLISLP KWIMEIGQEN  300
QDIFFTDREG RRNTEYLSWG IDKERVLCGR TGIEVYFDFM RSFHMEFRNL TEEGLIFAIE  360
IGMGASGELR YPSIPERMGW RYPGIGEFQC YDRYMQKNLR QSALTRGHLY WARGPDNAGY  420
YNSRPHETGF FCDGGDYDSY YGRFFLNWYS GVLIDHVDPV LSLATLAFDG AKIVVKIPSM  480
YWWYKTASHA AELTAGFYNP TNRDGYSPVF RMLRKHSVLL KLTCYGPEYA VQDNDEAFAD  540
PEGLTWQVMN AAWDHGLSLC IESVLPCLDG DIYSQILNTA KPRNDPDRHH ASFFAYRQQP  600
PFISQRDVYF SELSSLVKCM HGEAPQNEEG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1bya_A	1e-121	193	583	11	401	BETA-AMYLASE
1byb_A	1e-121	193	583	11	401	BETA-AMYLASE
1byc_A	1e-121	193	583	11	401	BETA-AMYLASE
1byd_A	1e-121	193	583	11	401	BETA-AMYLASE
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462899293

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK120049	1e-40	AK120049.1 Oryza sativa Japonica Group cDNA clone:J013000A07, full insert sequence.
GenBank	AP004886	1e-40	AP004886.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0576F08.
GenBank	AP014958	1e-40	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811466.1	0.0	beta-amylase 8 isoform X2
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A2S3GL09	0.0	A0A2S3GL09_9POAL; Beta-amylase
STRING	Si016592m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2141	36	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.2	0.0	beta-amylase 2

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]