PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462899018
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GATA
Protein Properties Length: 269aa    MW: 28778.1 Da    PI: 4.5733
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462899018genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.56.5e-17164200135
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C+nCgt++  Tp +Rrgp g++tLCnaCGl+++ kg+
  462899018 164 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKGT 200
                **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132011.6855287IPR010399Tify domain
PfamPF062009.3E-95477IPR010399Tify domain
PROSITE profilePS5101713.36492134IPR010402CCT domain
PfamPF062039.7E-1592132IPR010402CCT domain
PROSITE profilePS501148.774158202IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-10158211IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.18E-11160208No hitNo description
Gene3DG3DSA:3.30.50.105.7E-14163202IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.37E-16163212No hitNo description
PROSITE patternPS003440164191IPR000679Zinc finger, GATA-type
PfamPF003201.7E-14164200IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MRDPAAAALP PGDGDGEDDS EDEEDDVDDD EEELPAPAPA QEAPAPAPVS AFPANPNQLT  60
LLFQGEVYVF DSVTPDKGYD DILRRTDIPA KRVASLIRFR EKRKERNFDK KIRYAVRKEV  120
ALRMQRRKGQ FAGRASLEGE SPATSCDPAS QGSGQDFPSQ ESKCQNCGTS EKMTPAMRRG  180
PAGPRTLCNA CGLMWANKGT LRSCPKAKVE SPMVALEQYP QSNLAASQSG SDNKALVIPK  240
NGNVAASSGD VMDDLVPADA ADIGAPKAL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462899018
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9637541e-142EU963754.1 Zea mays clone 272371 GATA transcription factor 25 mRNA, complete cds.
GenBankEU9649661e-142EU964966.1 Zea mays clone 282829 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464073.11e-121GATA transcription factor 18
SwissprotQ10F251e-120GAT18_ORYSJ; GATA transcription factor 18
TrEMBLC5WPL51e-119C5WPL5_SORBI; Uncharacterized protein
STRINGSb01g011840.11e-120(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.25e-54ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]