PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462898851 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 391aa MW: 43919.3 Da PI: 10.1973 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 131.8 | 5e-41 | 60 | 191 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 +pGfrF Pt+eel+++yL+++++g++ ++e++i+ vdiy+++P+dL++ + + ++++w+fF++r +++ +g r+ r+t sgyWkatg+ v+s+ 462898851 60 TPGFRFYPTEEELLSFYLRHRLAGTRPDVERFIPVVDIYRYHPRDLQAmagaA-NVsDTEQWFFFCPRTEREVHGGRPVRTTPSGYWKATGSPSGVVSSs 158 69***************************999**************9535532.223566********************************99999876 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ g k+t+vfy+grap+g++t+W m+ey++ 462898851 159 ADRVLGEKRTMVFYEGRAPTGTRTSWKMNEYKA 191 77889**************************85 PP | |||||||
2 | NAM | 72.2 | 1.3e-22 | 199 | 271 | 57 | 128 |
NAM 57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 w+fF++r +++ +g r+ r+t sgyWkatg+ v+s+ +++ g k+t+vfy+grap+g++t+W m+ey++ 462898851 199 PWFFFCPRTEREVHGGRPVRTTPSGYWKATGSPSGVVSSsADRVLGEKRTMVFYEGRAPTGTRTSWKMNEYKA 271 69******************************9999987677889**************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.89E-43 | 53 | 190 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 43.597 | 59 | 209 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-21 | 61 | 190 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.1E-25 | 195 | 304 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-11 | 199 | 270 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 17.814 | 205 | 304 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 391 aa Download sequence Send to blast |
ASKEIKPKGY YYNKDHNIFH QGKRKEKNRF CFLSRRRKNC RAHSKQELAR MATGGDPFAT 60 PGFRFYPTEE ELLSFYLRHR LAGTRPDVER FIPVVDIYRY HPRDLQAMAG AANVSDTEQW 120 FFFCPRTERE VHGGRPVRTT PSGYWKATGS PSGVVSSSAD RVLGEKRTMV FYEGRAPTGT 180 RTSWKMNEYK AAVVADPGPW FFFCPRTERE VHGGRPVRTT PSGYWKATGS PSGVVSSSAD 240 RVLGEKRTMV FYEGRAPTGT RTSWKMNEYK AAVVADPGPV AAAAVNSAPI RLRNEFSVCR 300 VYKSNGTLRS FDRRPLNPVG HDQAVAVHHQ QQQLVLPSTT NTTNQRAADN IANTQTTENS 360 HDISSGSRDA VVDGTYDTAI DWESLIPLLR T |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-26 | 61 | 307 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-26 | 61 | 307 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-26 | 61 | 307 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-26 | 61 | 307 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-26 | 61 | 307 | 19 | 168 | NAC domain-containing protein 19 |
4dul_B | 3e-26 | 61 | 307 | 19 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 22 | 37 | KRKEKNRFCFLSRRRK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462898851 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020407877.1 | 7e-80 | uncharacterized protein LOC103654359 | ||||
Swissprot | Q9FMR3 | 6e-47 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A1D6QHT0 | 2e-78 | A0A1D6QHT0_MAIZE; Putative NAC domain transcription factor superfamily protein | ||||
STRING | OB11G12830.1 | 8e-77 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G22380.1 | 4e-49 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
---|---|---|---|
|