PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462898851
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 391aa    MW: 43919.3 Da    PI: 10.1973
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462898851genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM131.85e-41601912128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                +pGfrF Pt+eel+++yL+++++g++ ++e++i+ vdiy+++P+dL++    + +  ++++w+fF++r +++ +g r+ r+t sgyWkatg+   v+s+ 
  462898851  60 TPGFRFYPTEEELLSFYLRHRLAGTRPDVERFIPVVDIYRYHPRDLQAmagaA-NVsDTEQWFFFCPRTEREVHGGRPVRTTPSGYWKATGSPSGVVSSs 158
                69***************************999**************9535532.223566********************************99999876 PP

        NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                 +++ g k+t+vfy+grap+g++t+W m+ey++
  462898851 159 ADRVLGEKRTMVFYEGRAPTGTRTSWKMNEYKA 191
                77889**************************85 PP

2NAM72.21.3e-2219927157128
        NAM  57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                 w+fF++r +++ +g r+ r+t sgyWkatg+   v+s+  +++ g k+t+vfy+grap+g++t+W m+ey++
  462898851 199 PWFFFCPRTEREVHGGRPVRTTPSGYWKATGSPSGVVSSsADRVLGEKRTMVFYEGRAPTGTRTSWKMNEYKA 271
                69******************************9999987677889**************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-4353190IPR003441NAC domain
PROSITE profilePS5100543.59759209IPR003441NAC domain
PfamPF023653.2E-2161190IPR003441NAC domain
SuperFamilySSF1019415.1E-25195304IPR003441NAC domain
PfamPF023651.1E-11199270IPR003441NAC domain
PROSITE profilePS5100517.814205304IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
ASKEIKPKGY YYNKDHNIFH QGKRKEKNRF CFLSRRRKNC RAHSKQELAR MATGGDPFAT  60
PGFRFYPTEE ELLSFYLRHR LAGTRPDVER FIPVVDIYRY HPRDLQAMAG AANVSDTEQW  120
FFFCPRTERE VHGGRPVRTT PSGYWKATGS PSGVVSSSAD RVLGEKRTMV FYEGRAPTGT  180
RTSWKMNEYK AAVVADPGPW FFFCPRTERE VHGGRPVRTT PSGYWKATGS PSGVVSSSAD  240
RVLGEKRTMV FYEGRAPTGT RTSWKMNEYK AAVVADPGPV AAAAVNSAPI RLRNEFSVCR  300
VYKSNGTLRS FDRRPLNPVG HDQAVAVHHQ QQQLVLPSTT NTTNQRAADN IANTQTTENS  360
HDISSGSRDA VVDGTYDTAI DWESLIPLLR T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-266130719168NO APICAL MERISTEM PROTEIN
1ut4_B3e-266130719168NO APICAL MERISTEM PROTEIN
1ut7_A3e-266130719168NO APICAL MERISTEM PROTEIN
1ut7_B3e-266130719168NO APICAL MERISTEM PROTEIN
4dul_A3e-266130719168NAC domain-containing protein 19
4dul_B3e-266130719168NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12237KRKEKNRFCFLSRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462898851
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020407877.17e-80uncharacterized protein LOC103654359
SwissprotQ9FMR36e-47NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A1D6QHT02e-78A0A1D6QHT0_MAIZE; Putative NAC domain transcription factor superfamily protein
STRINGOB11G12830.18e-77(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.14e-49NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]