PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462898146 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 247aa MW: 28484.4 Da PI: 8.7154 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.9 | 2e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++g+lye++s 462898146 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGQLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 84.6 | 2.1e-28 | 85 | 178 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqR....hllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +e++ +s+++e+ kLk ++enLqr+qR +llGedL++L +keL+qLe+qL++sl++iRs++++++l+q+ +lq++e++l e+nk+Lr+k 462898146 85 KENELVQSSRNEYLKLKGRVENLQRTQRqvelNLLGEDLGTLGVKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRKE 178 46667899****************9999444458*********************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.814 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.67E-43 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 6.93E-33 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.6E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.8E-22 | 87 | 177 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.82 | 90 | 186 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGQLYEFCSG 60 QSMTKSLERY QKCSYGGPDT AVQNKENELV QSSRNEYLKL KGRVENLQRT QRQVELNLLG 120 EDLGTLGVKE LEQLEKQLDS SLRHIRSTRT QHMLDQLTDL QRREQMLCEA NKCLRRKEKL 180 EETNQVQGQV VWEHGANLLG YERQSPQQAP SHVGNGFFHP LEAAAEPTLQ IGFAHEQMNN 240 FMPTWLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 2e-30 | 75 | 175 | 1 | 98 | Developmental protein SEPALLATA 3 |
4ox0_B | 2e-30 | 75 | 175 | 1 | 98 | Developmental protein SEPALLATA 3 |
4ox0_C | 2e-30 | 75 | 175 | 1 | 98 | Developmental protein SEPALLATA 3 |
4ox0_D | 2e-30 | 75 | 175 | 1 | 98 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:9339904, ECO:0000269|Ref.9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462898146 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803091.1 | 1e-160 | MADS-box transcription factor 8 isoform X2 | ||||
Swissprot | Q9SAR1 | 1e-156 | MADS8_ORYSJ; MADS-box transcription factor 8 | ||||
TrEMBL | A0A1D6ESU4 | 1e-160 | A0A1D6ESU4_MAIZE; MADS27 | ||||
STRING | LPERR09G11910.1 | 1e-158 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3483 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.1 | 7e-91 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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