PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462898045
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family SBP
Protein Properties Length: 333aa    MW: 35380.6 Da    PI: 7.179
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462898045genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP50.26.7e-161101414778
                SSEEETTT--SS--S-STTTT-------S--- CS
        SBP  47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                +rfh l efDe+krsCr+rL++hn+rrrk+q+
  462898045 110 TRFHLLAEFDEAKRSCRKRLDGHNRRRRKPQP 141
                6****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.12644139IPR004333Transcription factor, SBP-box
PfamPF031101.8E-8110138IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.9E-13110144IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.108.2E-5110126IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDWDLKMPVS WDLAELEHDA VPAISAATAP VAAGXXXXXG TPTRAECSVD LKLGGLGEFG  60
AAEVAKEPPP AKGPTASSSA AAVVPSASPL KRPRSGPGGL TCPSCAVDGT RFHLLAEFDE  120
AKRSCRKRLD GHNRRRRKPQ PDNMNSGSFM TSQQVFYAVR KLSSLFPDGH FRLVSGCRDK  180
VLVIRRSEAR AKLTGAPPPP PPESSSSNKI FSPDGLTPVL DSDCALSLLS SPTNSSSVDV  240
SRMVQPTEHI PMAQPLVPNL QQFGSSPSWF ACSQASSGVV STARFTCPSM ESEQLNTVLV  300
PSSDGHEMNY HGMFHVGEGS SDGTSPSLPF SWQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121138KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462898045
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9707916e-60EU970791.1 Zea mays clone 350913 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803089.11e-110squamosa promoter-binding-like protein 18 isoform X2
SwissprotQ0J0K13e-47SPL18_ORYSJ; Squamosa promoter-binding-like protein 18
TrEMBLA0A3S6H5L91e-128A0A3S6H5L9_BAMML; Squamosa-promoter binding protein-like protein
STRINGGRMZM2G061734_P019e-87(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.16e-14SBP family protein