PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462898011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB | ||||||||
Protein Properties | Length: 226aa MW: 25678.1 Da PI: 10.0348 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.9 | 2.6e-14 | 16 | 79 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg................tWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+ ++++G +W++I++ g+ R++k+c++rw +yl 462898011 16 KGLWSPEEDERLASHIARFGVSswssiprirrwrfgvsCWSSIPELAGLQRCGKSCRLRWMNYL 79 678***********************************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.9 | 3.1e-15 | 85 | 127 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rgr++++E++l++ ++k lG+ W+ Ia++++ gR+++++k++w+ 462898011 85 RGRFSQQEEDLIIALHKALGNS-WSQIAARLP-GRSDNEIKNFWN 127 89******************99.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-20 | 8 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 9.907 | 11 | 79 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 3.51E-7 | 13 | 54 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-8 | 15 | 81 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.52E-6 | 19 | 79 | No hit | No description |
SuperFamily | SSF46689 | 6.68E-20 | 49 | 126 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-6 | 50 | 79 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 24.075 | 80 | 134 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-25 | 83 | 134 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.1E-15 | 84 | 132 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-13 | 85 | 127 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.26E-9 | 87 | 127 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MGRVHPCCSE EKKMRKGLWS PEEDERLASH IARFGVSSWS SIPRIRRWRF GVSCWSSIPE 60 LAGLQRCGKS CRLRWMNYLR PDLKRGRFSQ QEEDLIIALH KALGNSWSQI AARLPGRSDN 120 EIKNFWNARL RKKLRQKEAS TAARKDPAAA SGRGTSTSTS TEAARRCEDD FLRAMVDDAS 180 YVLGDFYLDG SQDGLISFWE GHSFSELKLR ASRSICVAEF AGSWNV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-26 | 14 | 134 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 134 | RLRKKLR |
2 | 129 | 135 | LRKKLRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462898011 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817318.1 | 2e-83 | myb-related protein Hv33-like | ||||
Swissprot | Q8LPH6 | 5e-56 | MYB86_ARATH; Transcription factor MYB86 | ||||
TrEMBL | A0A3L6SVX5 | 1e-82 | A0A3L6SVX5_PANMI; Transcription factor MYB82-like | ||||
STRING | Pavir.Ea00486.1.p | 1e-82 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14448 | 17 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 5e-58 | myb domain protein 86 |