PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462898011
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 226aa    MW: 25678.1 Da    PI: 10.0348
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462898011genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.92.6e-141679148
                     TSSS-HHHHHHHHHHHHHTTTT................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg................tWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l+  ++++G                  +W++I++  g+ R++k+c++rw +yl
        462898011 16 KGLWSPEEDERLASHIARFGVSswssiprirrwrfgvsCWSSIPELAGLQRCGKSCRLRWMNYL 79
                     678***********************************************************97 PP

2Myb_DNA-binding47.93.1e-1585127145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rgr++++E++l++ ++k lG+  W+ Ia++++ gR+++++k++w+
        462898011  85 RGRFSQQEEDLIIALHKALGNS-WSQIAARLP-GRSDNEIKNFWN 127
                      89******************99.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-20882IPR009057Homeodomain-like
PROSITE profilePS500909.9071179IPR017877Myb-like domain
SuperFamilySSF466893.51E-71354IPR009057Homeodomain-like
SMARTSM007171.4E-81581IPR001005SANT/Myb domain
CDDcd001672.52E-61979No hitNo description
SuperFamilySSF466896.68E-2049126IPR009057Homeodomain-like
PfamPF002491.4E-65079IPR001005SANT/Myb domain
PROSITE profilePS5129424.07580134IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2583134IPR009057Homeodomain-like
SMARTSM007177.1E-1584132IPR001005SANT/Myb domain
PfamPF002491.2E-1385127IPR001005SANT/Myb domain
CDDcd001673.26E-987127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGRVHPCCSE EKKMRKGLWS PEEDERLASH IARFGVSSWS SIPRIRRWRF GVSCWSSIPE  60
LAGLQRCGKS CRLRWMNYLR PDLKRGRFSQ QEEDLIIALH KALGNSWSQI AARLPGRSDN  120
EIKNFWNARL RKKLRQKEAS TAARKDPAAA SGRGTSTSTS TEAARRCEDD FLRAMVDDAS  180
YVLGDFYLDG SQDGLISFWE GHSFSELKLR ASRSICVAEF AGSWNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-261413425128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134RLRKKLR
2129135LRKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462898011
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817318.12e-83myb-related protein Hv33-like
SwissprotQ8LPH65e-56MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A3L6SVX51e-82A0A3L6SVX5_PANMI; Transcription factor MYB82-like
STRINGPavir.Ea00486.1.p1e-82(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144481725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.15e-58myb domain protein 86