PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462898003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB | ||||||||
Protein Properties | Length: 158aa MW: 18451.7 Da PI: 10.9016 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.4 | 2.9e-12 | 16 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 +g W++eEde+l ++++G tW++ +++ ++R++k+c++rw +yl 462898003 16 KGLWSPEEDERLFTQITRHGVSTWSSLINCLFlnvvkagLRRSGKSCRLRWMNYL 70 678***********************99999999*******************97 PP | |||||||
2 | Myb_DNA-binding | 44.5 | 3.7e-14 | 78 | 119 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + ++ E+e ++ + + lG++ W+tIa+ m+ gRt++++k++w++ 462898003 78 PISKREEEVIISLQQSLGNR-WSTIAASMP-GRTDNEIKNYWNS 119 56889***************.*********.***********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 10.232 | 11 | 70 | IPR017877 | Myb-like domain |
SMART | SM00717 | 3.7E-9 | 15 | 72 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.11E-27 | 15 | 117 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-9 | 16 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-18 | 17 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.40E-6 | 19 | 70 | No hit | No description |
PROSITE profile | PS51294 | 21.082 | 71 | 125 | IPR017930 | Myb domain |
SMART | SM00717 | 5.1E-12 | 75 | 123 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-24 | 78 | 125 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-11 | 78 | 119 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.85E-8 | 78 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MVRKPSHADG ESKERKGLWS PEEDERLFTQ ITRHGVSTWS SLINCLFLNV VKAGLRRSGK 60 SCRLRWMNYL RPDLKKEPIS KREEEVIISL QQSLGNRWST IAASMPGRTD NEIKNYWNSR 120 IRKRLNAAAK XXXXXXXXXX IIRSYTNILA RSNVEAWY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-24 | 16 | 125 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462898003 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU971559 | 1e-80 | EU971559.1 Zea mays clone 367166 anthocyanin regulatory C1 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817319.1 | 3e-69 | myb-related protein Hv33-like | ||||
Swissprot | P20027 | 1e-45 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | A0A2T7DRN8 | 1e-68 | A0A2T7DRN8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb00461.1.p | 3e-70 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8703 | 25 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 2e-44 | myb domain protein 86 |