PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462897919
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 523aa    MW: 55397.3 Da    PI: 9.0737
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462897919genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-1663107147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a +++G   W++I +++g ++t+ q++s+ qk+
        462897919  63 REKWTEDEHKRFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 107
                      789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.16E-1557110IPR009057Homeodomain-like
PROSITE profilePS5129419.19158112IPR017930Myb domain
TIGRFAMsTIGR015578.6E-1661110IPR006447Myb domain, plants
SMARTSM007172.0E-1262110IPR001005SANT/Myb domain
PfamPF002492.8E-1463106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-963103IPR009057Homeodomain-like
CDDcd001671.15E-965108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MTCMESEEQE TMMATDENAV GDRAGGENAA AHVHNPPRPG GMDLSGDEQV PKARKPYTIT  60
KQREKWTEDE HKRFLEALQL HGRAWRRIQE HIGTKTAVQI RSHAQKFFTK VVVRGSSGSS  120
TGSGAAPAIQ IPPPRPKRKP AHPYPRKVDG AARKHAPALK QLEKPPALRM QSLREQDDGS  180
PTSVLTAAQT VMRADALDGA FSNSSSGGGR SVAGSDERGN GGGSSVDRED GCLSPSIPAA  240
ELASRAPNTK AFGDAKDCTA SEAPEFKLFG KKVAVKDSYQ NLKNRRDLKI DAPPASVDQA  300
TRNAVPFAAA NSWNPWPSNM QQLMYFVPHP DGFPAQSVVP WLGYNGSLPC SLFYPRSVAS  360
NQQHHQPSEA SDQREGSLTG SNSGSSAAPA SAARNSDAAE SHAGQGNASE SGTAPSVPRL  420
SKCLSSASTN RRGFVPYKRC AAESEAPRSA APRGGAEESH AGQGNASESG TAPSVPRLSK  480
CLSSASTNRR GFVPYKRCAA ESEAPRSAAP GEEADGELTR LCL
Cis-element ? help Back to Top
SourceLink
PlantRegMap462897919
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9651821e-117EU965182.1 Zea mays clone 284337 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953478.10.0protein REVEILLE 2 isoform X2
TrEMBLA0A1E5VGC70.0A0A1E5VGC7_9POAL; Protein LHY (Fragment)
STRINGSi017289m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.41e-32MYB_related family protein