PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462897883 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 158aa MW: 17980.5 Da PI: 10.2006 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 147.8 | 5.7e-46 | 21 | 138 | 12 | 129 |
NAM 12 eelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfyk 110 elv++yL +k+ + ++ ++i+e+d++k+ePw+Lp k+k +ekewyfFs rd+ky+tg r+nrat +gyWkatgkd+e+ s+ +g+lvg+kktLvfy+ 462897883 21 AELVSYYLFRKAVDGSFCG-RAIAEIDLNKCEPWELPDKAKMGEKEWYFFSLRDRKYPTGLRTNRATVAGYWKATGKDREIRSArTGALVGMKKTLVFYR 119 69**************888.88***************99999****************************************9868889*********** PP NAM 111 grapkgektdWvmheyrle 129 grapkg+kt+Wvmheyrle 462897883 120 GRAPKGNKTSWVMHEYRLE 138 *****************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 45.667 | 10 | 158 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.71E-49 | 21 | 144 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-20 | 21 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MEGGAAAAAH PSPISSHLAR AELVSYYLFR KAVDGSFCGR AIAEIDLNKC EPWELPDKAK 60 MGEKEWYFFS LRDRKYPTGL RTNRATVAGY WKATGKDREI RSARTGALVG MKKTLVFYRG 120 RAPKGNKTSW VMHEYRLEGT YAYHYFPGST RIQNRDTM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-43 | 22 | 137 | 29 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-43 | 22 | 137 | 29 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-43 | 22 | 137 | 29 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-43 | 22 | 137 | 29 | 142 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-43 | 22 | 137 | 32 | 145 | NAC domain-containing protein 19 |
3swm_B | 4e-43 | 22 | 137 | 32 | 145 | NAC domain-containing protein 19 |
3swm_C | 4e-43 | 22 | 137 | 32 | 145 | NAC domain-containing protein 19 |
3swm_D | 4e-43 | 22 | 137 | 32 | 145 | NAC domain-containing protein 19 |
3swp_A | 4e-43 | 22 | 137 | 32 | 145 | NAC domain-containing protein 19 |
3swp_B | 4e-43 | 22 | 137 | 32 | 145 | NAC domain-containing protein 19 |
3swp_C | 4e-43 | 22 | 137 | 32 | 145 | NAC domain-containing protein 19 |
3swp_D | 4e-43 | 22 | 137 | 32 | 145 | NAC domain-containing protein 19 |
4dul_A | 4e-43 | 22 | 137 | 29 | 142 | NAC domain-containing protein 19 |
4dul_B | 4e-43 | 22 | 137 | 29 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division. {ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:12163400, ECO:0000269|PubMed:12492830, ECO:0000269|PubMed:12610213, ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15500463, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16798887, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:17122068, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247, ECO:0000269|PubMed:9212461}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462897883 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM and SYD, at the chromatin level, and conferring a very specific spatial expression pattern. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16854978, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU970442 | 1e-127 | EU970442.1 Zea mays clone 345601 CUC2 mRNA, complete cds. | |||
GenBank | KJ727847 | 1e-127 | KJ727847.1 Zea mays clone pUT5891 NAC transcription factor (NAC119) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965434.1 | 9e-85 | protein CUP-SHAPED COTYLEDON 1 | ||||
Swissprot | O04017 | 2e-71 | NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2 | ||||
TrEMBL | A0A3L6RXJ3 | 5e-84 | A0A3L6RXJ3_PANMI; Protein CUP-SHAPED COTYLEDON 1-like | ||||
STRING | Pavir.J00978.1.p | 4e-86 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9940 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53950.1 | 2e-73 | NAC family protein |