PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462897739 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 342aa MW: 40556.9 Da PI: 6.3321 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.5 | 2.3e-25 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien +nrqvtfskRr g+lKKA+EL vLCda++ viif +gk+yeyss 462897739 9 KKIENPTNRQVTFSKRRMGLLKKANELAVLCDAQIGVIIFFGSGKMYEYSS 59 68***********************************************96 PP | |||||||
2 | K-box | 50 | 1.3e-17 | 85 | 154 | 14 | 83 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 +++ +e++++k+e + Lq +++GedL+ Lsl++ +LeqqLe sl k+R +K+ell +++ e++++ 462897739 85 QQKIIREMTRMKDERNRLQIIMSQYMGEDLTMLSLQDVSNLEQQLEFSLYKVRLRKQELLDQELLEMRNR 154 578889************************************************************9987 PP | |||||||
3 | K-box | 47.4 | 8e-17 | 273 | 342 | 14 | 83 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 +++ +e++++k+e + Lq +++GedL+ Lsl++ +LeqqLe sl k+R +K+ell +++ e++++ 462897739 273 QQKIIREMTRMKDERNRLQIIMSQYMGEDLTMLSLQDVSNLEQQLEFSLYKVRLRKQELLDQELLEMRNR 342 578889**********************************************************999975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.642 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.2E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.60E-35 | 2 | 76 | No hit | No description |
SuperFamily | SSF55455 | 1.83E-28 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.9E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.1E-14 | 81 | 154 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.748 | 85 | 189 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.2E-13 | 269 | 341 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.92 | 273 | 342 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MGRGRVELKK IENPTNRQVT FSKRRMGLLK KANELAVLCD AQIGVIIFFG SGKMYEYSSP 60 PWRIANIFDR YLKAPSTRFE EMDIQQKIIR EMTRMKDERN RLQIIMSQYM GEDLTMLSLQ 120 DVSNLEQQLE FSLYKVRLRK QELLDQELLE MRNRVCYAEF SIRPSLRHFL SESEPLSCDG 180 FVCSELQQEM HVSEVQSNQM CLMVRRTQSA EMVVNQKPFP WWDVGASQQQ LYGHEAESSM 240 TPLQLLPQLG EIANIFDRYL KAPSTRFEEM DIQQKIIREM TRMKDERNRL QIIMSQYMGE 300 DLTMLSLQDV SNLEQQLEFS LYKVRLRKQE LLDQELLEMR NR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-15 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6byy_B | 1e-15 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6byy_C | 1e-15 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6byy_D | 1e-15 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6bz1_A | 1e-15 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6bz1_B | 1e-15 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6bz1_C | 1e-15 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6bz1_D | 1e-15 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462897739 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020403834.1 | 1e-107 | MADS-box transcription factor 31 | ||||
Swissprot | Q84NC2 | 6e-94 | MAD31_ORYSJ; MADS-box transcription factor 31 | ||||
TrEMBL | A0A1D6HRZ7 | 1e-105 | A0A1D6HRZ7_MAIZE; Protein TRANSPARENT TESTA 16 | ||||
TrEMBL | A0A2T8IDS8 | 1e-105 | A0A2T8IDS8_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T8IDT3 | 1e-105 | A0A2T8IDT3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb00526.1.p | 1e-112 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1850 | 37 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 2e-38 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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