PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462897429 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 176aa MW: 20585.8 Da PI: 10.1452 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.5 | 6.1e-54 | 16 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 + pGfrFhPtdeelv +yLk+k+++k+l++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s+ +++ 462897429 16 MLPGFRFHPTDEELVRFYLKRKIQQKSLPI-ELIRQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSTRPNRVTGAGFWKATGTDRPIYSSdGSKC 114 579***************************.89***************9888999***************************************966677 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +glkk+Lvfykgra kg+ktdW+mhe+rl 462897429 115 IGLKKSLVFYKGRAAKGVKTDWMMHEFRL 143 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-56 | 14 | 148 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.735 | 16 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-26 | 18 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MDDIRSDEIE KQDEVMLPGF RFHPTDEELV RFYLKRKIQQ KSLPIELIRQ LDIYKYDPWD 60 LPKLASTGEK EWYFYCPRDR KYRNSTRPNR VTGAGFWKAT GTDRPIYSSD GSKCIGLKKS 120 LVFYKGRAAK GVKTDWMMHE FRLPSLTDPS VPQKKPLEKT IPPNVSNLNA AILKKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-53 | 8 | 143 | 6 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462897429 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC196472 | 1e-115 | AC196472.3 Zea mays BAC clone ZMMBBb-235B12 from chromosome 5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002454285.1 | 1e-119 | putative NAC domain-containing protein 94 | ||||
Swissprot | Q9FIW5 | 5e-92 | NAC94_ARATH; Putative NAC domain-containing protein 94 | ||||
TrEMBL | A0A0P0VPE0 | 1e-119 | A0A0P0VPE0_ORYSJ; Os02g0745250 protein | ||||
TrEMBL | C5XYT2 | 1e-117 | C5XYT2_SORBI; Uncharacterized protein | ||||
STRING | OS02T0745250-00 | 1e-120 | (Oryza sativa) | ||||
STRING | Sb04g028015.1 | 1e-118 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3366 | 38 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39820.1 | 2e-94 | NAC domain containing protein 94 |