PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462897384 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | HSF | ||||||||
Protein Properties | Length: 633aa MW: 71687.4 Da PI: 4.6216 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.5 | 6.7e-36 | 45 | 135 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d+++++++sws+ +nsfvv+d++ fa+ +Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++i+ 462897384 45 FLTKTYDMVDDPTTDHVVSWSAGNNSFVVWDPHAFATVMLPRHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKNIR 132 9****************************************************************999.........******************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k 462897384 133 RRK 135 *98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.1E-39 | 41 | 134 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.05E-36 | 41 | 134 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.1E-62 | 41 | 134 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.2E-31 | 45 | 134 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-18 | 45 | 68 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-18 | 83 | 95 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 84 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-18 | 96 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SMART | SM00415 | 0.0015 | 314 | 404 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 7.89E-5 | 372 | 404 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.5E-5 | 374 | 404 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 633 aa Download sequence Send to blast |
MDPMLNAVKE ESSHGEGGLL GVAEDGPATA PRPMEGLHDA GPPPFLTKTY DMVDDPTTDH 60 VVSWSAGNNS FVVWDPHAFA TVMLPRHFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF 120 LRGQKHLLKN IRRRKPPAHN APNQQSVGPY LEVGHFGYEA EIDQLKRDKQ LLMAEVVKLR 180 QEQQNTKANL KAMEDRLQGT EQKQLQMMAF LARVMRNPEF LKQLMSQNEM RKELQEAISK 240 KRRRRIDQGP EVDDLGASSS LEQGSPLLFD PPDPAEFLVD GIPTDIGNSA LDAEVLVETQ 300 GIDLGISEQQ QNIPQADFSE DFWEQLLNEG LAEENDNPVI EDDMNVLSEK MGYLNSDSPT 360 SRKYPSPELT AAGGFRKVDP DRWEFANEGF LRGQKHLLKN IRRRKPPAHN APNQQSVGPY 420 LEVGHFGYEA EIDRLKRDKQ LLMAEVVKLR QEQQNTKANL KAMEDRLQGT EQKQLQMMAF 480 LARVMRNPEF LKQLMSQNEM RKELQEAISK KRRRRIDQGP EVDDLGASSS LEQGSPLLFD 540 PPDPAEFLVD GIPTDIGNSA LDAEVLVEPQ GIDLGISEQQ QNIPQADFNE DFWEQLLNEG 600 LAEENDNPVI EDDMNVLSEK MGYLNSDSPT SRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-25 | 40 | 134 | 12 | 120 | Heat shock factor protein 1 |
5d5u_B | 2e-25 | 40 | 134 | 21 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-25 | 40 | 134 | 21 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-25 | 40 | 134 | 21 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 509 | 514 | KKRRRR |
2 | 510 | 515 | KRRRRI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462897384 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU156630 | 0.0 | KU156630.1 Cynodon transvaalensis heat stress transcription factor A2b mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025799458.1 | 0.0 | heat stress transcription factor A-2b-like | ||||
Swissprot | Q6VBB2 | 0.0 | HFA2B_ORYSJ; Heat stress transcription factor A-2b | ||||
TrEMBL | A0A168T038 | 0.0 | A0A168T038_9POAL; Heat stress transcription factor A2b | ||||
STRING | Si030256m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP308 | 37 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-111 | heat shock transcription factor A6B |
Publications ? help Back to Top | |||
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