PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462897343

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

FAR1

Protein Properties

Length: 427aa MW: 46572.9 Da PI: 7.9377

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462897343	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	21.4	8.3e-07	141	185	1	46
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekk 46 +fYn Y+ e+GF +r +++ k+ ++itk++ +Cs++ r ++ 462897343 141 EFYNLYSWELGFGIRWNRNAKN-SGKSITKQDICCSCQKPRVKKGV 185 6***************9999.7777*******9987766654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50966	8.852	242	278	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MASIPAGDGG LRAGAELSRR GGDASGATAA APDVRSEVFS GPGPRATFKE AVGGXXXXXX 60 XXXXXXXXXX XXXQVVGGGG AQGSGWVRRP RFGSIPDERV PQAGRVSAYE QSLRNYAEKK 120 SSVVMNPAVS TSFDSHAEAY EFYNLYSWEL GFGIRWNRNA KNSGKSITKQ DICCSCQKPR 180 VKKGVPIEEH AAKVYTRAML EKFGETIFES GSYVVDEKEK GKAYSVRHIR SDHQESWSQL 240 EFQVIIRAED CAVICECGLG GHMGMPCCHA VKVMIHLGMQ EIPCGNIVRR WTRNARDISL 300 DHLIEHQEDM TPGMLRALKY AALYVAAMEV VNLGLSSNHA FQIAMTGLTQ AKQQVLEASR 360 VKDGIGLAEQ QRCPSAEQGS EPSSDVHDVS SVTTDDATSA AQKLSLETKV PGRKRKLLSH 420 MQADNPQ

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MASIPAGDGG LRAGAELSRR GGDASGATAA APDVRSEVFS GPGPRATFKE AVGGXXXXXX  60
XXXXXXXXXX XXXQVVGGGG AQGSGWVRRP RFGSIPDERV PQAGRVSAYE QSLRNYAEKK  120
SSVVMNPAVS TSFDSHAEAY EFYNLYSWEL GFGIRWNRNA KNSGKSITKQ DICCSCQKPR  180
VKKGVPIEEH AAKVYTRAML EKFGETIFES GSYVVDEKEK GKAYSVRHIR SDHQESWSQL  240
EFQVIIRAED CAVICECGLG GHMGMPCCHA VKVMIHLGMQ EIPCGNIVRR WTRNARDISL  300
DHLIEHQEDM TPGMLRALKY AALYVAAMEV VNLGLSSNHA FQIAMTGLTQ AKQQVLEASR  360
VKDGIGLAEQ QRCPSAEQGS EPSSDVHDVS SVTTDDATSA AQKLSLETKV PGRKRKLLSH  420
MQADNPQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462897343

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002459424.2	3e-64	protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A2T7ELD8	1e-101	A0A2T7ELD8_9POAL; Uncharacterized protein
STRING	Pavir.Ba03654.1.p	5e-93	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	1e-11	FAR1-related sequence 12