PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462897080
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARR-B
Protein Properties Length: 329aa    MW: 37386.3 Da    PI: 5.9653
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462897080genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.17.1e-27190244156
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                k+rl Wt +LH++F+ av+ L G+ekA+Pk+ile+m+vk Lt+e+v+SHLQkYRl+
  462897080 190 KARLSWTVQLHRQFITAVNFL-GAEKAVPKKILEVMNVKHLTREQVASHLQKYRLH 244
                68*******************.9*******************************97 PP
2Response_reg56.61.5e-19131211109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl++dD+ + + +++++l k gy +v++ ++ +ea+  +  + +++Dli+ D   p  dGl +l+e +++  ++p ++++++g+  ++ +++  Ga+
     462897080  13 VLVIDDNSSYLPVMEELLLKCGY-KVTTYKNVREAMCFIcgNLHTVDLIISDAFFPAEDGLLILQEVTSKF-DIPTVIMSSTGDTGTVMRYITNGAS 107
                   89*********************.************999644455**********************9999.9************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   dfl Kp+ +eel +
     462897080 108 DFLIKPIRIEELKN 121
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.42E-279137IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.5E-3010141No hitNo description
SMARTSM004484.3E-1611123IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011031.83412127IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.0E-1613121IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.25E-1814127No hitNo description
PROSITE profilePS5129410.864187246IPR017930Myb domain
SuperFamilySSF466892.42E-19188247IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-27189247IPR009057Homeodomain-like
TIGRFAMsTIGR015576.1E-25190244IPR006447Myb domain, plants
PfamPF002497.0E-7192242IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MDQETIWPSG LRVLVIDDNS SYLPVMEELL LKCGYKVTTY KNVREAMCFI CGNLHTVDLI  60
ISDAFFPAED GLLILQEVTS KFDIPTVIMS STGDTGTVMR YITNGASDFL IKPIRIEELK  120
NIWQHVFRKK IGEEQRNNAQ HVVNPLFYPP NEAPSPCQER TIGFAEAAMA LESEVREGNG  180
TVTDVRDLRK ARLSWTVQLH RQFITAVNFL GAEKAVPKKI LEVMNVKHLT REQVASHLQK  240
YRLHLRKSAQ TLRKDDAASS SSHPHESNNV KTQFNHSQNS MYPDQDGCME ITDYSLPKED  300
LSSGSDCMLG EQNNYSPEGF HDFRWDSDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-18189247462ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates Hd3a and other FT-like genes independently from Hd1. May also activate MADS-box transcription factors involved in flowering regulation. {ECO:0000269|PubMed:15078816}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462897080
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Daily oscillation and diurnal expression in plants grown in short day (SD) but not in long day (LD) conditions. {ECO:0000269|PubMed:15078816}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464520.21e-171two-component response regulator EHD1
SwissprotQ7Y0W31e-144EHD1_ORYSI; Two-component response regulator EHD1
TrEMBLA0A1B6QKF91e-170A0A1B6QKF9_SORBI; Uncharacterized protein
STRINGOS10T0463400-011e-141(Oryza sativa)
STRINGSb01g019980.11e-141(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112222741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-59response regulator 2