PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462896759

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NF-YC

Protein Properties

Length: 328aa MW: 36911.3 Da PI: 6.4355

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462896759	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	51.6	2.1e-16	49	123	24	98
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 rikki++adedv +i+ +Pvl+ska elf+ +l r+ + + +t+ s +++++ +++dfl ++v + 462896759 49 PRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTHHITIRKGAKTVSSSHLKQCIHTYNVYDFLREVVSK 123 49********************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.4E-21	50	109	IPR009072	Histone-fold
Pfam	PF00808	9.0E-15	50	108	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.52E-18	55	125	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MRKKLDTRFP AVEFHTRKEF RLSDDWWICC RSKQSVRKKI EVEVEKIEPR IKKIMQADED 60 VGKIALAVPV LVSKALELFL QDLCDRTHHI TIRKGAKTVS SSHLKQCIHT YNVYDFLREV 120 VSKVPDMGTA DANADDKFGK RKAAEEGSEE ELKRTRNESE RHTINGRGRG RGRGRGRRGG 180 RGSWREFSAT HEKSDDQSSK PADLKLEVSD VTEAKEGTPM SSGRACLRNF DLNLDPADED 240 VEVAVPLQTQ STASTTSLSA VAGPSVHQLN EGATTARPSA PRSIEGPKLK DFLEWQLPDM 300 TNMTMDPIQF ALTSNHTLED DEDYDNEE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	7e-18	50	108	16	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	166	175	RGRGRGRGRG
2	166	176	RGRGRGRGRGR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462896759

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961645.1	1e-116	dr1-associated corepressor isoform X1
TrEMBL	A0A0A9G083	1e-116	A0A0A9G083_ARUDO; Uncharacterized protein
STRING	Pavir.J02260.1.p	1e-115	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2172	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-39	nuclear factor Y, subunit C11