PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462896542
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MIKC_MADS
Protein Properties Length: 266aa    MW: 30267.2 Da    PI: 9.3649
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462896542genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.89e-314190150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs +g+lyey+
  462896542 41 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSGRGRLYEYA 90
               79***********************************************8 PP

2K-box1033.9e-341092055100
      K-box   5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                s++  ++e +a+++qqe+akL++ i++Lq+++R l+G+ ++s+sl++L+qLe +Lek+++kiR++Knell+++++++qk+e el+++n +Lr+k+ e
  462896542 109 SNTGtVAEVNAQYYQQESAKLRQTISSLQNSNRTLVGDAINSMSLRDLKQLEGRLEKGINKIRARKNELLYAEVDYMQKREMELHSDNLYLRTKVSE 205
                33335999**************************************************************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.2543393IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-393392IPR002100Transcription factor, MADS-box
CDDcd002651.73E-4434105No hitNo description
SuperFamilySSF554553.01E-3235105IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003589IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-323555IPR002100Transcription factor, MADS-box
PfamPF003192.2E-264289IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-325570IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-327091IPR002100Transcription factor, MADS-box
PfamPF014867.3E-26118203IPR002487Transcription factor, K-box
PROSITE profilePS5129714.462119209IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MLNMMADLSC GPSKVKEQPT PANSGPSAGS DKPARGKIEI KRIENTTNRQ VTFCKRRNGL  60
LKKAYELSVL CDAEVALIVF SGRGRLYEYA NHSVKATIER YKKANTDTSN TGTVAEVNAQ  120
YYQQESAKLR QTISSLQNSN RTLVGDAINS MSLRDLKQLE GRLEKGINKI RARKNELLYA  180
EVDYMQKREM ELHSDNLYLR TKVSENERGH EQPMGMQMEA ASTSEYEHMV PYDSRNFLQV  240
SIMQQPQHYT HHLQPTTLQL GQQQFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A4e-1934105172MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B4e-1934105172MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C4e-1934105172MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D4e-1934105172MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A6e-1934105172Myocyte-specific enhancer factor 2A
3kov_B6e-1934105172Myocyte-specific enhancer factor 2A
3kov_I6e-1934105172Myocyte-specific enhancer factor 2A
3kov_J6e-1934105172Myocyte-specific enhancer factor 2A
3p57_A6e-1934105172Myocyte-specific enhancer factor 2A
3p57_B6e-1934105172Myocyte-specific enhancer factor 2A
3p57_C6e-1934105172Myocyte-specific enhancer factor 2A
3p57_D6e-1934105172Myocyte-specific enhancer factor 2A
3p57_I6e-1934105172Myocyte-specific enhancer factor 2A
3p57_J6e-1934105172Myocyte-specific enhancer factor 2A
5f28_A7e-1934105273MEF2C
5f28_B7e-1934105273MEF2C
5f28_C7e-1934105273MEF2C
5f28_D7e-1934105273MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269|PubMed:11828031, ECO:0000269|PubMed:16326928, ECO:0000269|PubMed:9869408}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462896542
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816640.11e-161MADS-box transcription factor 3 isoform X3
SwissprotQ407041e-140MADS3_ORYSJ; MADS-box transcription factor 3
TrEMBLA0A0A8XZ731e-173A0A0A8XZ73_ARUDO; Uncharacterized protein
STRINGPavir.Ea00226.1.p1e-156(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-104MIKC_MADS family protein
Publications ? help Back to Top
  1. Kyozuka J,Shimamoto K
    Ectopic expression of OsMADS3, a rice ortholog of AGAMOUS, caused a homeotic transformation of lodicules to stamens in transgenic rice plants.
    Plant Cell Physiol., 2002. 43(1): p. 130-5
    [PMID:11828031]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]