PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462896542 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 266aa MW: 30267.2 Da PI: 9.3649 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.8 | 9e-31 | 41 | 90 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs +g+lyey+ 462896542 41 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSGRGRLYEYA 90 79***********************************************8 PP | |||||||
2 | K-box | 103 | 3.9e-34 | 109 | 205 | 5 | 100 |
K-box 5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s++ ++e +a+++qqe+akL++ i++Lq+++R l+G+ ++s+sl++L+qLe +Lek+++kiR++Knell+++++++qk+e el+++n +Lr+k+ e 462896542 109 SNTGtVAEVNAQYYQQESAKLRQTISSLQNSNRTLVGDAINSMSLRDLKQLEGRLEKGINKIRARKNELLYAEVDYMQKREMELHSDNLYLRTKVSE 205 33335999**************************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.254 | 33 | 93 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-39 | 33 | 92 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.73E-44 | 34 | 105 | No hit | No description |
SuperFamily | SSF55455 | 3.01E-32 | 35 | 105 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 35 | 89 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-32 | 35 | 55 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-26 | 42 | 89 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-32 | 55 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-32 | 70 | 91 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.3E-26 | 118 | 203 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.462 | 119 | 209 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0048443 | Biological Process | stamen development | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 266 aa Download sequence Send to blast |
MLNMMADLSC GPSKVKEQPT PANSGPSAGS DKPARGKIEI KRIENTTNRQ VTFCKRRNGL 60 LKKAYELSVL CDAEVALIVF SGRGRLYEYA NHSVKATIER YKKANTDTSN TGTVAEVNAQ 120 YYQQESAKLR QTISSLQNSN RTLVGDAINS MSLRDLKQLE GRLEKGINKI RARKNELLYA 180 EVDYMQKREM ELHSDNLYLR TKVSENERGH EQPMGMQMEA ASTSEYEHMV PYDSRNFLQV 240 SIMQQPQHYT HHLQPTTLQL GQQQFS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1egw_A | 4e-19 | 34 | 105 | 1 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_B | 4e-19 | 34 | 105 | 1 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_C | 4e-19 | 34 | 105 | 1 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_D | 4e-19 | 34 | 105 | 1 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
3kov_A | 6e-19 | 34 | 105 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_B | 6e-19 | 34 | 105 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_I | 6e-19 | 34 | 105 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_J | 6e-19 | 34 | 105 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_A | 6e-19 | 34 | 105 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_B | 6e-19 | 34 | 105 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_C | 6e-19 | 34 | 105 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_D | 6e-19 | 34 | 105 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_I | 6e-19 | 34 | 105 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_J | 6e-19 | 34 | 105 | 1 | 72 | Myocyte-specific enhancer factor 2A |
5f28_A | 7e-19 | 34 | 105 | 2 | 73 | MEF2C |
5f28_B | 7e-19 | 34 | 105 | 2 | 73 | MEF2C |
5f28_C | 7e-19 | 34 | 105 | 2 | 73 | MEF2C |
5f28_D | 7e-19 | 34 | 105 | 2 | 73 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269|PubMed:11828031, ECO:0000269|PubMed:16326928, ECO:0000269|PubMed:9869408}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00609 | ChIP-seq | Transfer from AT4G18960 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462896542 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816640.1 | 1e-161 | MADS-box transcription factor 3 isoform X3 | ||||
Swissprot | Q40704 | 1e-140 | MADS3_ORYSJ; MADS-box transcription factor 3 | ||||
TrEMBL | A0A0A8XZ73 | 1e-173 | A0A0A8XZ73_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ea00226.1.p | 1e-156 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP649 | 37 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-104 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|