PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462896261

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

FAR1

Protein Properties

Length: 310aa MW: 34703.7 Da PI: 7.8033

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462896261	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61	3.6e-19	138	230	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+ YA++vGF+v + +skk ++ ++++f+C+ke ++++ek+k +k++r+r r+gC+ak++v +++d+++ ++++++H H+l+ 462896261 138 FYRLYATKVGFDVWVGQSKKV--DRIAIWKRFYCNKEAESSSEKEKapkimnISKQNRNRRIVRCGCEAKVTVVRTSDKQFIYSDFVEKHAHALV 230 9**************9999..7888**********999999998899999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.7E-17	138	230	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
LDVKQLLDTA TAKVTEVQLE DCYQTTYHWA ELVRTFCGVC LLDLKHLGVA LSPVHQFFNS 60 SFIVLNQRML DPMDTTSSAV AVGRQECDDA QSVAEAGTTA YMLDACSTQG VFLHSECDED 120 MKPAIGMQFK TLDDAEVFYR LYATKVGFDV WVGQSKKVDR IAIWKRFYCN KEAESSSEKE 180 KAPKIMNISK QNRNRRIVRC GCEAKVTVVR TSDKQFIYSD FVEKHAHALV KTPASKQLMK 240 ANRKVSEKAK SSLLTCHKAS IGTSAAFRLL RVSEGGFEFA GCTLKGYAEF SPESEMCYKF 300 SGCADVHREP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462896261

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024314063.1	4e-50	protein FAR1-RELATED SEQUENCE 5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15006	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-11	FAR1-related sequence 5