PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462896237 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 200aa MW: 22295.3 Da PI: 6.7779 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 40.4 | 9e-13 | 28 | 68 | 91 | 128 |
NAM 91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ls + + g+kk Lvfy+gr+pkg+kt+W+mheyrl 462896237 28 PILSGaggEAKCLGVKKALVFYQGRSPKGTKTEWLMHEYRL 68 4555444345569**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 19.813 | 1 | 92 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.4E-17 | 28 | 92 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-5 | 35 | 68 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MVNELYYCRE GDVRRRRVVL LQPTGAQPIL SGAGGEAKCL GVKKALVFYQ GRSPKGTKTE 60 WLMHEYRLLL DTRPNHNSMR LDDWVLCRVR NKQACVSSSQ LAPAENSSSS DPTISHDDEA 120 DMAPPSNVDD GHLLRYLIEG GGPDLQEPNI AASSSSTDHH RLQVSSVLES IKRKLSFQAI 180 DELYLLQPPP STYLCLLYIT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-19 | 22 | 94 | 99 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-19 | 22 | 94 | 99 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-19 | 22 | 94 | 99 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-19 | 22 | 94 | 99 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-19 | 24 | 94 | 104 | 170 | NAC domain-containing protein 19 |
3swm_B | 5e-19 | 24 | 94 | 104 | 170 | NAC domain-containing protein 19 |
3swm_C | 5e-19 | 24 | 94 | 104 | 170 | NAC domain-containing protein 19 |
3swm_D | 5e-19 | 24 | 94 | 104 | 170 | NAC domain-containing protein 19 |
3swp_A | 5e-19 | 24 | 94 | 104 | 170 | NAC domain-containing protein 19 |
3swp_B | 5e-19 | 24 | 94 | 104 | 170 | NAC domain-containing protein 19 |
3swp_C | 5e-19 | 24 | 94 | 104 | 170 | NAC domain-containing protein 19 |
3swp_D | 5e-19 | 24 | 94 | 104 | 170 | NAC domain-containing protein 19 |
4dul_A | 5e-19 | 22 | 94 | 99 | 167 | NAC domain-containing protein 19 |
4dul_B | 5e-19 | 22 | 94 | 99 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462896237 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971462.1 | 8e-42 | NAC transcription factor 32 | ||||
TrEMBL | A0A3L6QZ61 | 7e-43 | A0A3L6QZ61_PANMI; NAC domain-containing protein 72-like | ||||
STRING | Si004195m | 3e-41 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08790.1 | 8e-22 | NAC family protein |