PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462895997
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HB-PHD
Protein Properties Length: 1360aa    MW: 147570 Da    PI: 6.077
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462895997genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.18.3e-107507921153
                HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
   Homeobox  11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                  + L+++Fek++yps++++e LA+ lgLt  qV  WF   R 
  462895997 750 IKQKLKDHFEKDPYPSRATKENLAQVLGLTFIQVDKWFASTRH 792
                5689**********************************88776 PP
2Homeobox32.61.3e-109591004752
                 --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
   Homeobox    7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52  
                 f +  ++ L+++Fek++yps+++ + LA++lgLt  qV+ WF   R
  462895997  959 FGPIVTQKLKAHFEKDPYPSRSTVQSLAQELGLTIIQVRRWFSSTR 1004
                 55667899**********************************8665 PP
3PHD431e-14429483150
                SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
        PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 
                +C++Cg+   + +++++lCdg C++ fH++Cl+++l +e++p g   w+C+ C +
  462895997 429 FCAICGSkdVTLQNDIILCDGaCDRGFHQNCLNPPLLNEDIPPGdeGWFCPACVC 483
                7******64445********66********************9999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.77E-15419487IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.109.4E-15425484IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.181427484IPR019787Zinc finger, PHD-finger
SMARTSM002492.2E-12429482IPR001965Zinc finger, PHD-type
PfamPF006286.5E-12429483IPR019787Zinc finger, PHD-finger
CDDcd155041.17E-27429481No hitNo description
PROSITE patternPS013590430481IPR019786Zinc finger, PHD-type, conserved site
SMARTSM003893.0E-10740801IPR001356Homeobox domain
SuperFamilySSF466895.56E-11742796IPR009057Homeodomain-like
CDDcd000861.56E-11744795No hitNo description
Gene3DG3DSA:1.10.10.601.4E-10747801IPR009057Homeodomain-like
PfamPF000462.8E-7750792IPR001356Homeobox domain
PROSITE profilePS5007112.244754797IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-119441004IPR009057Homeodomain-like
SuperFamilySSF466895.56E-119471004IPR009057Homeodomain-like
PROSITE profilePS5007112.9249501010IPR001356Homeobox domain
SMARTSM003892.9E-109521014IPR001356Homeobox domain
CDDcd000863.22E-119531004No hitNo description
PfamPF000464.4E-89591004IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1360 aa     Download sequence    Send to blast
MGKKGSEVSP SKRYPLRSTH SSGRVLRSAS NKNNTACSEP LNDSATAQPA LRKRKSGSSS  60
GSTNNSVRVL RSASKNKDDV CSESLNDSIA GEPAANKRTG IGPSNATSPI SSVRVLRSAT  120
KNKDDTCSES LNDIIVGEPA TNKKTGIGPS KAASPINSVR VLHSASKNED EAPLNGSTTG  180
EQAAHKRKFV TPSKVGHANN SVRVLRSASK NKNDACSEYL NDSTVAQPSA KKRKTGSPLK  240
VGSPPGSGRV LRSNSKGKNE TFDEPVNDSP AAQPATRKRK SDTPPNEGSQ KLGVRVLRSA  300
SKRENDALFE PQNVSTSDQP AGKRKVVRSS QERSPKKAYL KVCQKVRSIL NRMNYEQSLI  360
QAYASEGWKG QSLEKIRPEK ELERAKAEIL RCKIKIREAF QNMDSLLSEG KLEESLFDSA  420
GEIFSEDIFC AICGSKDVTL QNDIILCDGA CDRGFHQNCL NPPLLNEDIP PGDEGWFCPA  480
CVCKIDCVDA LNELQGTKLS IHDSWEKVFP EAASPANGSK QLDASDPPVG DSGDNDYNSV  540
LAEAHMGNEV RSGAGIDGKG TVDDLGLPSE DSEDDDFDPA GPDSSEDQKN ESHSEESDFT  600
SHSDDFCTEI AKSTGQGEVS VSPLSNVNEE SCNDAFMEMD LVQDVVLPVS GRRQVERLDY  660
KKLYDEAYGE ESSSYSDDEE WSGKENPEDS ETDGSVRPGK RRSRRASAGH PVNQHTPQNE  720
RHYGSVNEHK VDVLRSNGSN STARRFGPVI KQKLKDHFEK DPYPSRATKE NLAQVLGLTF  780
IQVDKWFAST RHSSRVAAAK KGKRTGSHTT IDNGGTTVDG AQVREPNDEV LVKLTAEGNG  840
LVYEGELMQN NLDEGNKEDM LLSRAETETE AHGKESSDQS DDDKDWSGTS TSQTGLEDIE  900
IDSLAASNRA KQLSRRAPVR QQNHEHTPLS ERIHGYVNER QTETPCSDGS SGKARKYHFG  960
PIVTQKLKAH FEKDPYPSRS TVQSLAQELG LTIIQVRRWF SSTRHYSSVS AAKKGKDPGN  1020
QTTEKNDSTI VDGIQGTESS NVMMENQTAD RNDMVSQKLM LQINLNEGNN GDIILNQYPS  1080
CEDTVVTTPT AVSREVGPPG YGPGENQGNG ALWNTAFEQG LITTPSTVSI EVGPPGYGLG  1140
ENLGYGASWN TISEQRILTT PTTTMSMSQE VCPPGYGPGE NQASGASWNT SPKQREIMTP  1200
NTSSREAGPP GYGPREDQVN GASWNTSSEQ RVGTAPSTTI SRQVGLPGYG PGENPGSGAS  1260
WNTGTEQRVV MTPSTIPREV GPPGYWPGEI QGNREKSVFM TSTTTSNKVG HLGYWPRENQ  1320
GNGASRNESP KGTSSEKLEL DDEARKKAIA RELRRMKKFR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275280TRKRKS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the regulation of gibberrelin (GA) signaling. Binds to the 5'-GATC-3' motif of HD16/EL1 promoter. Functions as a positive regulator of GA signaling by suppressing the expression of HD16/EL1, a negative regulator of GA signaling. {ECO:0000269|PubMed:21951842}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462895997
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gibberellin. {ECO:0000269|PubMed:21951842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969941.10.0remodeling and spacing factor 1
SwissprotQ8H9910.0HAZ1_ORYSJ; Homeobox protein HAZ1
TrEMBLA0A2T7DGV40.0A0A2T7DGV4_9POAL; Uncharacterized protein
STRINGPavir.Eb03127.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43933768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.19e-87Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wen BQ,Xing MQ,Zhang H,Dai C,Xue HW
    Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1.
    J Integr Plant Biol, 2011. 53(11): p. 869-78
    [PMID:21951842]