PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462895587
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 343aa    MW: 37192.4 Da    PI: 6.0015
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462895587genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78.2e-20135185155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +g++GVr++  +g+WvAeIr+p   + r  r +lg+f tae+Aa+a+++a+++++g
  462895587 135 CGFRGVRQRT-WGKWVAEIREP---N-RvNRLWLGTFPTAEDAARAYDEAARAMYG 185
                79*****999.**********8...2.489***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.16E-30135193No hitNo description
PfamPF008474.7E-13135185IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-21136194IPR016177DNA-binding domain
SMARTSM003802.9E-32136199IPR001471AP2/ERF domain
PROSITE profilePS5103222.26136193IPR001471AP2/ERF domain
PRINTSPR003674.0E-10137148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-31137194IPR001471AP2/ERF domain
PRINTSPR003674.0E-10159175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
GFPPVSLFSS PNFLTTFLLS SRELVATRPA PADTIAYPSN PAAVFRPAMT VDQKQAMPAQ  60
MQQQQVQTLQ PGRKKRPRRS RDGPTSVKAV IERWAQLNQQ LEHDPEAVKR PRKAPAKGSK  120
KGCMKGKGGP ENTVCGFRGV RQRTWGKWVA EIREPNRVNR LWLGTFPTAE DAARAYDEAA  180
RAMYGAVART NFPSEHAATS TQAAPAAAEG ALQSVSCEST TTSNHSDTVS SHKPEVSDTS  240
SSLNTRSEVL EIVPCEPKTE SATLEQSDDG HLDVEAGASS GPGTSSVVDE EVFEPLEPIA  300
NLPPGIDDGF DIEEMHGNSC DSFNLKFKNP LFCNEDGTKN DLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-161372001579Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462895587
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302434.11e-102dehydration-responsive element-binding protein 2B-like isoform X4
SwissprotQ5W6R42e-69DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B
TrEMBLA0A1N7TB581e-118A0A1N7TB58_9POAL; Transcription factor DREB2.3
STRINGSi022619m1e-97(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115153037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.21e-30DRE-binding protein 2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]