PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462895220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 357aa MW: 40428.7 Da PI: 6.8836 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107.9 | 1.2e-33 | 50 | 196 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...lelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra............ 77 +p+G++F+P+d+el+ ++L+ v+++ + +i+ +i++++P++Lp v+ + + +fF++++k+y++g+rk+r+ 462895220 50 MPAGVKFDPSDQELI-HHLQTMVDEEGsraH---PligefipTIQGEdGICYTHPENLP-GVTRNGLSKHFFHRSSKAYTNGTRKRRKihaqrnlnssdn 144 699************.99*****99995551...244454444776647**********.455556789******************8788888888776 PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l 462895220 145 AIEMRWHKTGKTRPVIV-GGRQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 196 44788************.99************5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.62E-35 | 43 | 214 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.047 | 50 | 214 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.6E-15 | 51 | 196 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MERGHPGSKI SSSCSSELTD GKLEERRNSI SRSCPSCGHE IDCNTDMIGM PAGVKFDPSD 60 QELIHHLQTM VDEEGSRAHP LIGEFIPTIQ GEDGICYTHP ENLPGVTRNG LSKHFFHRSS 120 KAYTNGTRKR RKIHAQRNLN SSDNAIEMRW HKTGKTRPVI VGGRQKGCKK ILVLYTNFGK 180 NRKPEKTNWV MHQYHLGDQE EKDGELVVSK VFYQTQPRQH TATAAEQRMI NGDREAETSE 240 AMHDVLSGCA AATTTSSIVM MQQQQRRMNQ ADGQFSVAHS VKRCHEVGIG DQDSSDEGEQ 300 NDDHNIPPQH QEEKQQHEEV ERRFAGLEEL IQGASTQSET HRPYRYWPPD RNQDQHG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462895220 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960907.1 | 1e-143 | NAC domain-containing protein 73 | ||||
Swissprot | Q9M0F8 | 1e-101 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A1E5W3H8 | 1e-145 | A0A1E5W3H8_9POAL; NAC domain-containing protein 73 | ||||
STRING | Pavir.J36494.1.p | 1e-140 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1453 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-103 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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