PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462895139

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

WRKY

Protein Properties

Length: 439aa MW: 46249.7 Da PI: 6.6453

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462895139	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.6	4e-31	191	249	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+ 462895139 191 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPSMLVITYNSEHNHP 249 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	32.902	185	251	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	2.8E-31	187	251	IPR003657	WRKY domain
SuperFamily	SSF118290	2.09E-26	188	251	IPR003657	WRKY domain
SMART	SM00774	2.9E-38	190	250	IPR003657	WRKY domain
Pfam	PF03106	2.3E-26	192	249	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MCDYFSQRME GDHHHHQAGD LTDIIRAGGA MQPSSSEGAG PSGDGGGGFG DALAGLPDSF 60 GCEYRASTGG GAADFFDFEA PVGGRGVDGG SGGVLPRAMQ MMPVLSPRGI RPYPAGIMVG 120 GDAVKLGMPT MMPGGLGVGP PCAFDAVAGL QMPSPRGGGI KRRKNQARKV VCIPAPAALA 180 GGRTTGEVVP SDLWAWRKYG QKPIKGSPYP RGYYRCSSSK GCPARKQVER SRTDPSMLVI 240 TYNSEHNHPW PTQRNALAGS TRSHHAKNNG NNSSACKNSS SQDLQKPMVK AEPDQTAAAS 300 ATTTTTSTSN STPPATAVKE EEMVASEMEK GMQHAADHDA SVTLDPGDLM QQMFNQSYRP 360 MIPEGGHHDD FFSDLAELES DPMSLIFSKE YLETKPGGEP GKEMATPKSL ADPLFNMLDW 420 GATTAVANSA GSSIKQNER

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MCDYFSQRME GDHHHHQAGD LTDIIRAGGA MQPSSSEGAG PSGDGGGGFG DALAGLPDSF  60
GCEYRASTGG GAADFFDFEA PVGGRGVDGG SGGVLPRAMQ MMPVLSPRGI RPYPAGIMVG  120
GDAVKLGMPT MMPGGLGVGP PCAFDAVAGL QMPSPRGGGI KRRKNQARKV VCIPAPAALA  180
GGRTTGEVVP SDLWAWRKYG QKPIKGSPYP RGYYRCSSSK GCPARKQVER SRTDPSMLVI  240
TYNSEHNHPW PTQRNALAGS TRSHHAKNNG NNSSACKNSS SQDLQKPMVK AEPDQTAAAS  300
ATTTTTSTSN STPPATAVKE EEMVASEMEK GMQHAADHDA SVTLDPGDLM QQMFNQSYRP  360
MIPEGGHHDD FFSDLAELES DPMSLIFSKE YLETKPGGEP GKEMATPKSL ADPLFNMLDW  420
GATTAVANSA GSSIKQNER

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	9e-24	164	252	2	80	Disease resistance protein RRS1
5w3x_D	9e-24	164	252	2	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462895139

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT061983	1e-146	BT061983.1 Zea mays full-length cDNA clone ZM_BFb0203F20 mRNA, complete cds.
GenBank	KJ727799	1e-146	KJ727799.1 Zea mays clone pUT5751 WRKY transcription factor (WRKY11) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953547.1	0.0	probable WRKY transcription factor 14
Swissprot	O64747	1e-68	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	K3YS51	0.0	K3YS51_SETIT; Uncharacterized protein
STRING	Si017095m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2592	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	3e-66	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]