PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462894957
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family TALE
Protein Properties Length: 355aa    MW: 39189.4 Da    PI: 9.5877
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462894957genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.72.7e-101301671954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   ++yp+  +++ LAk++gLt +qV++WF N R +
  462894957 130 FEHflHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 167
                554459******************************88 PP
2BELL96.91.7e-31473372
       BELL  3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
               +e q +k+kL+s++eeV+krY+qy++q+q+v++sFe+vag  +a+p++++Al+a+++hF+cLk +i +q+
  462894957  4 AEQQWRKTKLISMMEEVCKRYRQYYQQVQAVMASFETVAGFSNATPFAAMALRAMAKHFKCLKGMIQSQL 73
               58899**************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.5E-6171IPR006563POX domain
PfamPF075263.5E-28369IPR006563POX domain
PROSITE profilePS5007112.228108171IPR001356Homeobox domain
CDDcd000864.67E-13111172No hitNo description
SMARTSM003897.4E-11111175IPR001356Homeobox domain
SuperFamilySSF466892.05E-17113179IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-29114175IPR009057Homeodomain-like
PfamPF059203.2E-19128167IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MSGAEQQWRK TKLISMMEEV CKRYRQYYQQ VQAVMASFET VAGFSNATPF AAMALRAMAK  60
HFKCLKGMIQ SQLRNTAKVA AAKEGLSKEI TMFGLQRAGA LTAFGQPHNI WRPQRGLPER  120
AVSVLRAWLF EHFLHPYPTD GDKQMLAKQT GLTRNQVSNW FINARVRLWK PMVEEIHNLE  180
MRQVHKHPAL DKSPHGMHHQ THHSSECSGK PSDPSDSQLG QSSSITRNHN IAASQGFPDE  240
LSQVSHSIQG QVTFAYNGLS TPTHQHSLAS SQHQHMGGFG GGAANGGVSL TLGLHQNNKV  300
CIAEALPASL PPNLAHRFGL EDVSDTAYVM GSFGDQDRHF AKEIGAGHLV HDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-17117175563Homeobox protein Meis2
3k2a_B6e-17117175563Homeobox protein Meis2
4xrm_A6e-17117175563Homeobox protein Meis2
4xrm_B6e-17117175563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462894957
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970574.10.0BEL1-like homeodomain protein 9
TrEMBLA0A3L6SR340.0A0A3L6SR34_PANMI; BEL1-like homeodomain protein 9
STRINGPavir.Ea03389.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.12e-60TALE family protein