PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462894879 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 303aa MW: 34178.4 Da PI: 8.1084 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 153.1 | 1.2e-47 | 3 | 164 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 pGfrFhPtdeelv++yL++kv+gk+l++ e+ik++diyk++PwdLp +++ + +kewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s+ + 462894879 3 LPGFRFHPTDEELVTFYLRRKVAGKRLSI-EIIKDFDIYKHDPWDLPkASTISMDKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIYSAatG-- 99 69***************************.89***************445555789**************************************8651.. PP NAM 99 l...................................vglkktLvfykgrapkgektdWvmheyrl 128 +glkk+Lvfy+g+a kg+kt+W+mhe+rl 462894879 100 RaaxxxxxxxxxxxxxxxxxxxxxispaapgraggcIGLKKSLVFYRGSAGKGTKTEWMMHEFRL 164 235677888888999999999999999************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 53.103 | 2 | 191 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.19E-37 | 3 | 98 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-24 | 4 | 164 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.88E-13 | 133 | 191 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MVLPGFRFHP TDEELVTFYL RRKVAGKRLS IEIIKDFDIY KHDPWDLPKA STISMDKEWY 60 FFCLRGRKYR NSIRPNRVTG SGFWKATGID RPIYSAATGR AAXXXXXXXX XXXXXXXXXX 120 XXXISPAAPG RAGGCIGLKK SLVFYRGSAG KGTKTEWMMH EFRLPPRPES PGSTPSSQEA 180 EVWTICRIFR RSITYKRQPQ VAGTPDSSCS ITGSLESDTG DEYMNGLPPQ APMNHNVSDV 240 YNSYQFQGQW NSDAVVPPPA MAGAFHHGPA VQDDLYYKDG CNWDDMVMEL TDPSVFYDCS 300 SYA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-42 | 4 | 192 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-42 | 4 | 192 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-42 | 4 | 192 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-42 | 4 | 192 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-42 | 4 | 192 | 19 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-42 | 4 | 192 | 19 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462894879 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP093277 | 2e-75 | FP093277.1 Phyllostachys edulis cDNA clone: bphyem202p21, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803594.1 | 1e-141 | transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 9e-74 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A3L6T4I2 | 1e-140 | A0A3L6T4I2_PANMI; Transcription factor JUNGBRUNNEN 1-like | ||||
STRING | Si030477m | 1e-140 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 4e-76 | NAC domain containing protein 42 |