PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462894831 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C2H2 | ||||||||
Protein Properties | Length: 161aa MW: 18331.8 Da PI: 4.6402 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00079 | 12 | 31 | 3 | 21 |
ET.TTTEEESSHHHHHHHHH CS zf-C2H2 3 Cp.dCgksFsrksnLkrHir 21 Cp dC + F++++++ rH+ 462894831 12 CPvDCVTEFKTNDEFARHLE 31 999***************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52833 | 8.71E-16 | 15 | 76 | IPR012336 | Thioredoxin-like fold |
Gene3D | G3DSA:3.40.30.10 | 1.2E-18 | 17 | 156 | IPR012336 | Thioredoxin-like fold |
Pfam | PF00085 | 2.5E-5 | 21 | 82 | IPR013766 | Thioredoxin domain |
CDD | cd02947 | 6.69E-15 | 24 | 152 | No hit | No description |
SuperFamily | SSF52833 | 8.71E-16 | 109 | 156 | IPR012336 | Thioredoxin-like fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045454 | Biological Process | cell redox homeostasis |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
LPPVEEDDDE FCPVDCVTEF KTNDEFARHL ERAKATGALV VVDFFRPSCG SCKYIERGFT 60 RLCKGSGDDG APVVFLKHNV RASSVPDLYR LMCGADGEML LRFVQVIDEY DEQSEVAERL 120 RIKVVPLFHF YKDGELVESF ATRDKERIIA AIRKYTSIEP E |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462894831 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ244402 | 5e-68 | DQ244402.1 Zea mays clone 7096 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816469.1 | 3e-79 | thioredoxin-like 4, chloroplastic | ||||
Swissprot | Q6YTI3 | 4e-61 | TRL4_ORYSJ; Thioredoxin-like 4, chloroplastic | ||||
TrEMBL | A0A2T7F7Y5 | 4e-78 | A0A2T7F7Y5_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6QH30 | 3e-78 | A0A3L6QH30_PANMI; Thioredoxin-like 4, chloroplastic | ||||
STRING | Pavir.Ab02055.1.p | 3e-73 | (Panicum virgatum) |
Publications ? help Back to Top | |||
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