PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462894455
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GATA
Protein Properties Length: 545aa    MW: 60286.8 Da    PI: 7.714
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462894455genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.81.1e-16741135
       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
               C++Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  462894455  7 CRHCGVTSTPLWRNGPPEKPVLCNACGSRFRTKGS 41
               ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-11153IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-11446No hitNo description
CDDcd002021.14E-14640No hitNo description
Gene3DG3DSA:3.30.50.103.0E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.438740IPR000679Zinc finger, GATA-type
PfamPF003201.8E-14741IPR000679Zinc finger, GATA-type
PfamPF139191.9E-12278368IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MGKTGPCRHC GVTSTPLWRN GPPEKPVLCN ACGSRFRTKG SLANYTPMNR RDDIDDEEPR  60
ISKLKPPTSK PKAQKAKKKP PTIVENGPFS SQNFRRMADA DPSNRSSSGS AVSYSESCAP  120
YGSADASEMT GSAQSHAWES LVPSRKRSCV NRPRPSPVEK LAKDLHSIMH EEQLYYLSGS  180
SEEDLLYHSE TPLGSVEMGS GSVLLRHPNS KSLEEESEAS SIPAENKSYI TSESYSGSAS  240
FVVHSGSKAA SNLNAAIERP KRSLLQIEDN VRRDTLHYEN PHILESADSP LVSIDLEDII  300
SYTNFVKYLT KEDQQQLLKL LPLVDSSNPP ESLRSMFSSI QFADAIHNYQ RLLGEGILDP  360
FFSTNGEWNV VKRLALTNLT NCKWLECYKQ LKAKEFKETG EEENISGLKG VTTPAMKQLK  420
RPRDTHFHTS AELKVAMRSP KRVLKQGDLA PQCRSSSLPK SGYADFACTG RALNLFSLPP  480
EKLSSLISPQ YTDNYSDQDL LLDIPVNARH PEAELLYQPS QLSSVTRIST CMGGVAEGEG  540
RLKQQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap462894455
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319847.10.0GATA transcription factor 26
TrEMBLA0A0A8Y3B70.0A0A0A8Y3B7_ARUDO; Uncharacterized protein
STRINGGRMZM2G421212_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.34e-91GATA transcription factor 26